View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8918_high_5 (Length: 488)

Name: NF8918_high_5
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8918_high_5
NF8918_high_5
[»] chr3 (9 HSPs)
chr3 (210-472)||(18321960-18322230)
chr3 (224-299)||(44052683-44052757)
chr3 (224-299)||(44352105-44352179)
chr3 (224-299)||(54536882-54536956)
chr3 (71-115)||(18321819-18321863)
chr3 (71-111)||(8541102-8541142)
chr3 (66-110)||(42641952-42641996)
chr3 (71-111)||(44052823-44052863)
chr3 (71-111)||(44351999-44352039)
[»] chr4 (5 HSPs)
chr4 (224-472)||(17626499-17626738)
chr4 (342-472)||(20617622-20617750)
chr4 (235-338)||(20618476-20618569)
chr4 (65-110)||(20618673-20618718)
chr4 (71-111)||(16204745-16204785)
[»] chr7 (4 HSPs)
chr7 (235-472)||(46071210-46071435)
chr7 (224-299)||(9356600-9356674)
chr7 (71-111)||(9356740-9356780)
chr7 (71-111)||(49017058-49017098)
[»] chr6 (2 HSPs)
chr6 (225-472)||(15598467-15598702)
chr6 (63-111)||(29968733-29968781)
[»] chr2 (5 HSPs)
chr2 (371-472)||(1288405-1288507)
chr2 (216-335)||(1198123-1198242)
chr2 (216-335)||(1288515-1288634)
chr2 (372-467)||(1198019-1198114)
chr2 (71-110)||(1288689-1288728)
[»] chr1 (3 HSPs)
chr1 (221-299)||(27242629-27242706)
chr1 (67-110)||(43671450-43671493)
chr1 (71-111)||(27242765-27242805)
[»] chr8 (4 HSPs)
chr8 (224-299)||(9600061-9600135)
chr8 (224-299)||(28395527-28395601)
chr8 (71-111)||(28395689-28395729)
chr8 (71-111)||(33071764-33071804)
[»] chr5 (1 HSPs)
chr5 (417-469)||(39082947-39082999)
[»] scaffold0648 (1 HSPs)
scaffold0648 (71-111)||(4605-4645)
[»] scaffold0274 (1 HSPs)
scaffold0274 (71-111)||(4075-4115)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 210 - 472
Target Start/End: Original strand, 18321960 - 18322230
Alignment:
Q  210 ccacaccacacttatttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctcacgcctcacg 309  Q
    |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  18321960 ccacaccacaattgtttttgtctgcctctctcgcggtaccccctctcctctccatcctcacatatcaaaacgtgattcttctcacctctcacgcctcacg 18322059  T
Q  310 gtctccccactcttcaccttcggcgacgcaatggacgacggcaacataagtgca-------tcacggcgacgacgat-tggaggcagaagcagcacggtg 401  Q
    ||||||||||||||||||||||||||||| | | ||| ||||||||||||||||       |||||||||||||||| ||||||||| | ||||||||||    
T  18322060 gtctccccactcttcaccttcggcgacgcgacgaacggcggcaacataagtgcatcacgattcacggcgacgacgatatggaggcagcaccagcacggtg 18322159  T
Q  402 ctcctctgaactctcatacacctcacttcagtttgttgttttcttgattttcaattcaggtttgttcttct 472  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  18322160 ctcctctgaactctcatacacctcagttccgtttgttgttttcttgattttcaattcacgtttgttcttct 18322230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 44052757 - 44052683
Alignment:
Q  224 tttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctc 299  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  44052757 tttttgtctgc-tctctctcggtaccccctctcctctccatcctcacatatcaaaacaccattcttctcacctctc 44052683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 44352105 - 44352179
Alignment:
Q  224 tttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctc 299  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  44352105 tttttgtctgc-tctctctcggtaccccctctcctctccatcctcacatatcaaaacaccattcttctcacctctc 44352179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 54536956 - 54536882
Alignment:
Q  224 tttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctc 299  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  54536956 tttttgtctgc-tctctctcggtaccccctctcctctccatcctcacatatcaaaacaccattcttctcacctctc 54536882  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 18321819 - 18321863
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccctaat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  18321819 gcggatctctattgagacccccaggtgccacgacacccccctaat 18321863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 8541102 - 8541142
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    |||||||||| | |||||||||||||||||| |||||||||    
T  8541102 gcggatctctttagagacccccaggtgccactgcacccccc 8541142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 42641996 - 42641952
Alignment:
Q  66 taggagcggatctctattgagacccccaggtgccacggcaccccc 110  Q
    |||| |||||||||| | |||||||||||||||||| ||||||||    
T  42641996 taggggcggatctctttggagacccccaggtgccactgcaccccc 42641952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 44052863 - 44052823
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    ||||||||||||||||||||||||||||   ||||||||||    
T  44052863 gcggatctctattgagacccccaggtgctgtggcacccccc 44052823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 44351999 - 44352039
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    ||||||||||||||||||||||||||||   ||||||||||    
T  44351999 gcggatctctattgagacccccaggtgctgtggcacccccc 44352039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 224 - 472
Target Start/End: Complemental strand, 17626738 - 17626499
Alignment:
Q  224 tttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctcacgcctcacggtctccccactctt 323  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||       ||||||||||||||    
T  17626738 tttttgtctgtctctctctcggtaccccctttcctctccatcctcacatatcaaaacgcgattcttctaacctctcacg-------gtctccccactctt 17626646  T
Q  324 caccttcggcgacgcaatggacgacggcaacataagtgcatcacggcgacgacgattggaggcagaagcagcacggtgctcctctgaactctcatacacc 423  Q
    |||| ||||| |||| | ||| |||||||||||||||||||||||| ||||| |  ||||||||  |||| |||||||||||||||||||||||||||||    
T  17626645 caccatcggcaacgcgacggatgacggcaacataagtgcatcacggtgacgatg--tggaggcaacagcaacacggtgctcctctgaactctcatacacc 17626548  T
Q  424 tcacttcagtttgttgttttcttgattttcaattcaggtttgttcttct 472  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17626547 tcacttcagtttgttgttttcttgattttcagttcaggtttgttcttct 17626499  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 342 - 472
Target Start/End: Complemental strand, 20617750 - 20617622
Alignment:
Q  342 ggacgacggcaacataagtgcatcacggcgacgacgattggaggcagaagcagcacggtgctcctctgaactctcatacacctcacttcagtttgttgtt 441  Q
    |||||||||||||||||||||||||||||  ||| |  ||||||||| | |||||| ||||||||||||||||||||| |  ||||||||||||||||||    
T  20617750 ggacgacggcaacataagtgcatcacggcagcgatg--tggaggcagcaacagcacagtgctcctctgaactctcatagatgtcacttcagtttgttgtt 20617653  T
Q  442 ttcttgattttcaattcaggtttgttcttct 472  Q
    ||||||||||||| |||| ||||||||||||    
T  20617652 ttcttgattttcagttcaagtttgttcttct 20617622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 20618569 - 20618476
Alignment:
Q  235 ctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctcacgcctcacggtctccccactcttcaccttcggcg 334  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| ||||   |||||||||       ||||||||||||||||| |||||||||||||    
T  20618569 ctctctctcggtaccccctctcctctccctcctcacatatcaaaacgcga---ttctcacct-------ctcacggtctccccactgttcaccttcggcg 20618480  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 20618718 - 20618673
Alignment:
Q  65 ctaggagcggatctctattgagacccccaggtgccacggcaccccc 110  Q
    ||||| |||||| |||||||||||||| |||||||| |||||||||    
T  20618718 ctaggggcggatttctattgagacccctaggtgccatggcaccccc 20618673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 16204745 - 16204785
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    |||||||||| | |||||||||||||||||| |||||||||    
T  16204745 gcggatctctttagagacccccaggtgccactgcacccccc 16204785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 8e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 235 - 472
Target Start/End: Original strand, 46071210 - 46071435
Alignment:
Q  235 ctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctcacgcctcacggtctccccactcttcaccttcggcg 334  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||   ||||||||| |       |||||||||| ||||||||||||||    
T  46071210 ctctctctcggtaccccctctcctctccctcctcacatatcaaaacgcgattct---cacctctcatg-------gtctccccacgcttcaccttcggcg 46071299  T
Q  335 acgcaatggacgacggcaacataagtgcatcacggcgacgacgattggaggcagaagcagcacggtgctcctctgaactctcatacacctcacttcagtt 434  Q
    | || | |||||||||||||||||||||||||||||  | | |  ||||||||| |||||||| ||||||||||||||||||||| |  |||||||||||    
T  46071300 atgcgacggacgacggcaacataagtgcatcacggcagcaatg--tggaggcagcagcagcacagtgctcctctgaactctcatatatgtcacttcagtt 46071397  T
Q  435 tgttgttttcttgattttcaattcaggtttgttcttct 472  Q
    |||||||||||||||||||| || ||||||||||||||    
T  46071398 tgttgttttcttgattttcagtttaggtttgttcttct 46071435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 9356674 - 9356600
Alignment:
Q  224 tttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctc 299  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  9356674 tttttgtctgc-tctctctcggtaccccctctcctctccatcctcacatatcaaaacaccattcttctcacctctc 9356600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 9356780 - 9356740
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    ||||||||||||||||||||||||||||   ||||||||||    
T  9356780 gcggatctctattgagacccccaggtgctgtggcacccccc 9356740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 49017098 - 49017058
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    |||||||||| | |||||||||||||||||| |||||||||    
T  49017098 gcggatctctttagagacccccaggtgccactgcacccccc 49017058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 225 - 472
Target Start/End: Original strand, 15598467 - 15598702
Alignment:
Q  225 ttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctcacgcctcacggtctccccactcttc 324  Q
    |||||||||  |||||||||||||||||||||| |||| |||| ||||||||||| ||||||||   ||||||||| |       |||||||||||||||    
T  15598467 ttttgtctgagtctctctcggtaccccctctccactccctcctcacatatcaaaacgcgattct---cacctctcatg-------gtctccccactcttc 15598556  T
Q  325 accttcggcgacgcaatggacgacggcaacataagtgcatcacggcgacgacgattggaggcagaagcagcacggtgctcctctgaactctcatacacct 424  Q
    ||||||||| || | | ||||||||||||||||||||||| |||||  ||| |  ||||||||| ||||||||| |||||||| ||||||||||| || |    
T  15598557 accttcggcaacacgacggacgacggcaacataagtgcattacggcagcgatg--tggaggcagcagcagcacgatgctcctccgaactctcatagacgt 15598654  T
Q  425 cacttcagtttgttgttttcttgattttcaattcaggtttgttcttct 472  Q
     || |||||||||||||||||||||||||| |||||||||||||||||    
T  15598655 gacctcagtttgttgttttcttgattttcagttcaggtttgttcttct 15598702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 29968781 - 29968733
Alignment:
Q  63 acctaggagcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    ||||||| |||||||||| | |||||||||||||||||| |||||||||    
T  29968781 acctaggggcggatctctttagagacccccaggtgccactgcacccccc 29968733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 371 - 472
Target Start/End: Complemental strand, 1288507 - 1288405
Alignment:
Q  371 gacgacgat-tggaggcagaagcagcacggtgctcctctgaactctcatacacctcacttcagtttgttgttttcttgattttcaattcaggtttgttct 469  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  1288507 gacgacgatgtggaggcagcagcagcacggtgctcctctgaactctcatacacctcacttcagtttgttgttttcttgatttttagttcaggtttgttct 1288408  T
Q  470 tct 472  Q
    |||    
T  1288407 tct 1288405  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 216 - 335
Target Start/End: Complemental strand, 1198242 - 1198123
Alignment:
Q  216 cacacttatttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctcacgc-ctcacggtctc 314  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||| || |||||||||||    
T  1198242 cacacttgtttttgtctgtctctctctcggtaccccctctcctccccatcctcacatatcaaaacgc-attcttctcacctctcaagctctcacggtctc 1198144  T
Q  315 cccactcttcaccttcggcga 335  Q
    |||||||||||||||||||||    
T  1198143 cccactcttcaccttcggcga 1198123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 216 - 335
Target Start/End: Complemental strand, 1288634 - 1288515
Alignment:
Q  216 cacacttatttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctcacgc-ctcacggtctc 314  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||||||||  |||||||||| || ||||||||||||||||| || |||| ||||||    
T  1288634 cacacttgtttttgtctgtctctctctcggtactccctctcctctccatcctcgcatatcaaaacgc-attcttctcacctctcaggctctcatggtctc 1288536  T
Q  315 cccactcttcaccttcggcga 335  Q
    |||||||||| ||||||||||    
T  1288535 cccactcttctccttcggcga 1288515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 372 - 467
Target Start/End: Complemental strand, 1198114 - 1198019
Alignment:
Q  372 acgacgat-tggaggcagaagcagcacggtgctcctctgaactctcatacacctcacttcagtttgttgttttcttgattttcaattcaggtttgtt 467  Q
    |||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||    
T  1198114 acgacgatgtggaggcagcag-agcacggtgctcctctgaactctcatacacctcacttcagtttgttgttttttttattttcagttcaggtttgtt 1198019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 1288728 - 1288689
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcaccccc 110  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  1288728 gcggatctctattgagacccccaggtgccgtggcaccccc 1288689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 27242706 - 27242629
Alignment:
Q  221 ttatttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctc 299  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  27242706 ttatttttgtctgc-tctctctcggtaccccctctcctctccatcctcacatatcaaaacaccattcttctcacctctc 27242629  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 43671493 - 43671450
Alignment:
Q  67 aggagcggatctctattgagacccccaggtgccacggcaccccc 110  Q
    |||||||||||||| | |||||||||||||||||| ||||||||    
T  43671493 aggagcggatctctttagagacccccaggtgccactgcaccccc 43671450  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 27242805 - 27242765
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    ||||||||||||||||||||||||||||   ||||||||||    
T  27242805 gcggatctctattgagacccccaggtgctgtggcacccccc 27242765  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 9600135 - 9600061
Alignment:
Q  224 tttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctc 299  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||||||||  | ||||||||||||||||    
T  9600135 tttttgtctgc-tctctctcggtaccccctctcctctccatcatcacatatcaaaacaccattcttctcacctctc 9600061  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 28395601 - 28395527
Alignment:
Q  224 tttttgtctgcctctctctcggtaccccctctcctctccatccttacatatcaaaatgcgattcttctcacctctc 299  Q
    ||||||||||| |||||||||||||||||||||||||||||||| | |||||||||  | ||||||||||||||||    
T  28395601 tttttgtctgc-tctctctcggtaccccctctcctctccatcctcatatatcaaaacaccattcttctcacctctc 28395527  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 28395729 - 28395689
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    ||||||||||||||||||||||||||||   ||||||||||    
T  28395729 gcggatctctattgagacccccaggtgctgtggcacccccc 28395689  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 33071804 - 33071764
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    |||||||||| ||||||||||||||||||| |||| |||||    
T  33071804 gcggatctctgttgagacccccaggtgccatggcatccccc 33071764  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 39082999 - 39082947
Alignment:
Q  417 atacacctcacttcagtttgttgttttcttgattttcaattcaggtttgttct 469  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  39082999 atacacctcacttcagtttgttgtttccttgattttcaattaaggtttgttct 39082947  T

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Target: scaffold0648 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 4645 - 4605
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    |||||||||| | |||||||||||||||||| |||||||||    
T  4645 gcggatctctttagagacccccaggtgccactgcacccccc 4605  T

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Target: scaffold0274 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 4115 - 4075
Alignment:
Q  71 gcggatctctattgagacccccaggtgccacggcacccccc 111  Q
    |||||||||| | |||||||||||||||||| |||||||||    
T  4115 gcggatctctttagagacccccaggtgccactgcacccccc 4075  T

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