View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_high_7 (Length: 420)
Name: NF8918_high_7
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_high_7 |
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| [»] chr1 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 173 - 420
Target Start/End: Complemental strand, 52140714 - 52140476
Alignment:
| Q |
173 |
actagcctctctgttaatgcattatctttcaatatggcttcttcttcatcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaaca |
272 |
Q |
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| T |
52140714 |
actagcctctctgttaatgcattatctttcaatatggcttcttcttca---------accaaagtaacccttaagcttctggttgacaaaaagcaaaaca |
52140624 |
T |
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| Q |
273 |
aagttctattcgctgaagcatccaaagccgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacga |
372 |
Q |
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| T |
52140623 |
aagttctattcgctgaagcatccaaagctgccataaactctctcttaaacatgtttcgcttgtcttttggtactgttgtaaggctcatgagcaacaatga |
52140524 |
T |
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| Q |
373 |
caagcatttgcttggcagcttaggaaatctatatcatactagtactac |
420 |
Q |
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| T |
52140523 |
catgcatttgtttggcagcttaggaaatctatatcatactagtactac |
52140476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 52140883 - 52140746
Alignment:
| Q |
39 |
gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac |
138 |
Q |
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| T |
52140883 |
gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac |
52140784 |
T |
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| Q |
139 |
caaacttacttttacaattttctatacatcttccacta |
176 |
Q |
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| T |
52140783 |
caagcttacttttacaattttctatacatcttccacta |
52140746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 221 - 360
Target Start/End: Complemental strand, 52131077 - 52130938
Alignment:
| Q |
221 |
tcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaacaaagttctattcgctgaagcatccaaagccgccatagactctctcttaa |
320 |
Q |
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| T |
52131077 |
tcttcttccaccaaaatgacccttaagcttccggttgacacaaagcaaaacaaagttctgtttgcagaagcatcaaaagctgccgtagactctctcttaa |
52130978 |
T |
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| Q |
321 |
acatgtttcgtttgtcttttggtactgttgtaaggctcat |
360 |
Q |
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| T |
52130977 |
acatgtttcacttgtcttttggcacagttttaaggctcat |
52130938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 52131281 - 52131249
Alignment:
| Q |
106 |
cattccaatttccaatctctaagtaataaatac |
138 |
Q |
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| T |
52131281 |
cattccaatttccaatctcttagtaataaatac |
52131249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 173 - 420
Target Start/End: Original strand, 17525002 - 17525240
Alignment:
| Q |
173 |
actagcctctctgttaatgcattatctttcaatatggcttcttcttcatcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaaca |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||| |
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| T |
17525002 |
actagcctctctgttaatgcattatctttcaatatggcttctt---------cttcaaccaaagtgacccttaggcttctggttgacacaaagcaaaaca |
17525092 |
T |
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| Q |
273 |
aagttctattcgctgaagcatccaaagccgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacga |
372 |
Q |
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| T |
17525093 |
aagttatgtttgccgaatcatcacaagctgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagctacaacga |
17525192 |
T |
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| Q |
373 |
caagcatttgcttggcagcttaggaaatctatatcatactagtactac |
420 |
Q |
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| T |
17525193 |
catgcatttgtttggcagcttaggaaatctgtatcatactagtactac |
17525240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 17524854 - 17524955
Alignment:
| Q |
62 |
acatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaataccaaacttacttttacaattttct |
161 |
Q |
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| T |
17524854 |
acatcgaattaaattagcaataccgtggccagtaggacttcatacattccaatttccaatctctaagtaataaatacc-aagttacttttacaattttct |
17524952 |
T |
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| Q |
162 |
ata |
164 |
Q |
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| T |
17524953 |
ata |
17524955 |
T |
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