View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_13 (Length: 486)
Name: NF8918_low_13
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Complemental strand, 36464935 - 36464474
Alignment:
| Q |
13 |
gagaagcggaaaatataaagtattctgcggttaagcttcgattgctcaattaaggaaggatatgccactactatgatgagagtagagacattcttggtta |
112 |
Q |
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| T |
36464935 |
gagaagcggaaaatataaagtattctgcggttaagcttcgattgctcaattaagga----tatgccactactatgatgagagtagagacattcttggtta |
36464840 |
T |
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| Q |
113 |
agagagtgagagttggaggagttagtgagagaatgtaaaagagcaacttgaggaataa---------catttttctatatatccttctacttctaattca |
203 |
Q |
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| T |
36464839 |
agagagtgagagttggaggagttagtgagagaatgtgaaagagcaacttgaggaataatatctcaaccatttttctatatatccttctacttctaattca |
36464740 |
T |
|
| Q |
204 |
taagtgtttggagcacctcgttttgaattgaattgtatgtcacagttagtaattaaaacttacaaaaaatgagaaaaattgctgctaaagcactccaaca |
303 |
Q |
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| T |
36464739 |
taagtgttttgagcacctcgttttgaattgaattgtatgtcacagttagtaattagaactttcaaaaaatgagaaaaattgctgctaaagcactccaaca |
36464640 |
T |
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| Q |
304 |
gtacaaacacatttaacattcttcaacgatcatctacaaaagaaatggaatcttgctttgcagcatgaccatgtcaaactctatgcaccacaaacaatca |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36464639 |
gtacaaacacatttaacattcttcaacgatcatctacaaaagaaatggaatcttgctttgcagcatgaccatgtcaaactctatgtaccacaaacaatca |
36464540 |
T |
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| Q |
404 |
ttaaagcggggtacaatatttcgacaaattttaacatataaatttagccaacaaaaaatgagaatt |
469 |
Q |
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| T |
36464539 |
ttaaagcggggtacaatatttcgacaaattttaacatataaatttaaccaacaaaaaatgagaatt |
36464474 |
T |
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