View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8918_low_15 (Length: 464)

Name: NF8918_low_15
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8918_low_15
NF8918_low_15
[»] chr2 (30 HSPs)
chr2 (16-456)||(39473376-39473816)
chr2 (31-421)||(39458944-39459313)
chr2 (21-270)||(39152406-39152646)
chr2 (224-391)||(39421965-39422132)
chr2 (49-365)||(39215359-39215675)
chr2 (258-395)||(39415033-39415170)
chr2 (150-416)||(39137516-39137782)
chr2 (195-352)||(39414886-39415043)
chr2 (322-457)||(39152261-39152396)
chr2 (37-181)||(39414770-39414914)
chr2 (246-457)||(39487689-39487900)
chr2 (105-215)||(39137759-39137869)
chr2 (49-224)||(39192440-39192615)
chr2 (49-224)||(39198120-39198295)
chr2 (68-235)||(39397868-39398035)
chr2 (31-162)||(39421814-39421945)
chr2 (277-383)||(44614607-44614713)
chr2 (30-162)||(39381492-39381624)
chr2 (52-235)||(39468196-39468379)
chr2 (49-214)||(39222763-39222928)
chr2 (21-214)||(39389109-39389302)
chr2 (301-386)||(39369835-39369920)
chr2 (110-247)||(39369953-39370090)
chr2 (219-317)||(39381639-39381737)
chr2 (279-357)||(39389346-39389424)
chr2 (128-162)||(39487655-39487689)
chr2 (105-158)||(39124615-39124668)
chr2 (291-352)||(39130365-39130426)
chr2 (195-247)||(2361524-2361576)
chr2 (331-395)||(39451794-39451858)
[»] chr7 (2 HSPs)
chr7 (150-416)||(19807466-19807732)
chr7 (105-215)||(19807709-19807819)
[»] chr6 (1 HSPs)
chr6 (37-235)||(16113156-16113354)
[»] chr5 (1 HSPs)
chr5 (280-373)||(33560754-33560847)
[»] chr8 (1 HSPs)
chr8 (277-368)||(44951214-44951305)
[»] scaffold0250 (1 HSPs)
scaffold0250 (277-341)||(4257-4321)
[»] chr3 (1 HSPs)
chr3 (331-383)||(51574944-51574996)


Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Original strand, 39473376 - 39473816
Alignment:
Q  16 ggtgttccatcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39473376 ggtgttccatcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactagtactttgaact 39473475  T
Q  116 tattctcttttgactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttcttttttgattt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39473476 tattctcttttgactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttctttttttattt 39473575  T
Q  216 aagctccttaacccgacctttgaattcctccttcttcgttttaaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39473576 aagctccttaacccgacctttgaattcctccttcttcgttttaaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgt 39473675  T
Q  316 ccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttcttttctgattccagcttcttcacccacccttcaagttcaccct 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39473676 ccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttcttttctgattccggcttcttcacccacccttcaagttcaccct 39473775  T
Q  416 cctttggttctaaccctttcactctgacatcaagttgcttc 456  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  39473776 cctttggttctaaccccttcactctgacatcaagttgcttc 39473816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 31 - 421
Target Start/End: Complemental strand, 39459313 - 39458944
Alignment:
Q  31 ttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgact 130  Q
    ||||| ||||||||||| ||||||| ||||| ||||||||  ||||| ||||||||||||||    ||||||| ||||||||||||||||||||  |  |    
T  39459313 ttattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcat 39459214  T
Q  131 cgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttcttttttgatttaagctccttaacccg 230  Q
    ||| ||||||||   ||||||||||||||||| || || ||||||| ||||||| || | ||| |||||||||||||||||| || |||| ||||||| |    
T  39459213 cgaattctttccgctgttcttcaaattgcttctcttttaatttgaagtcctcaaactggctttcaaattgcttcttttttgaattgagctgcttaacctg 39459114  T
Q  231 acctttgaattcctccttcttcgttttaaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttt 330  Q
    |||||||||||||||||| || | || |||||||||| ||||||  |||                     ||||||||||||||||| | ||||| ||||    
T  39459113 acctttgaattcctccttatttgattcaaactccttcccttgaccttta---------------------aactccttcacttgtccttcaaattgcttt 39459035  T
Q  331 tcttttgattcgagctccttcagttggctctcgaaatgcttcttttctgattccagcttcttcacccacccttcaagttcaccctcctttg 421  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||| || ||||||||  ||||||| |||| |||| ||||    
T  39459034 tcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggccttcaaattcatcctcttttg 39458944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 21 - 270
Target Start/End: Complemental strand, 39152646 - 39152406
Alignment:
Q  21 tccatcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattc 120  Q
    |||||||||||||||||||||||||||  |||||| | ||||| |||||| |||||||||||||||||||||   |||||||        ||  ||||||    
T  39152646 tccatcatgtttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaacttgagctccttcactg-------ga--ttattc 39152556  T
Q  121 tcttttgactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttcttttttgatttaagct 220  Q
    |||||||||||||| |||||||| |||| ||||||||||||| || ||| |||||| |||||||||| | ||| ||||| ||||||||||||||||||||    
T  39152555 tcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatttaagct 39152456  T
Q  221 ccttaacccgacctttgaattcctccttcttcgttttaaactccttcact 270  Q
    |||||||| ||||||||||||||||||||    ||||||||| |||||||    
T  39152455 ccttaacctgacctttgaattcctccttcccttttttaaacttcttcact 39152406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 224 - 391
Target Start/End: Original strand, 39421965 - 39422132
Alignment:
Q  224 taacccgacctttgaattcctccttcttcgttttaaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgtccattaaa 323  Q
    ||||| |||||||||||| ||||| ||| | |||||||||||||| || || |||||||||||||||||||||| |||||||||||| ||||||||  ||    
T  39421965 taacctgacctttgaattgctcctcctttgatttaaactccttcaatttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcgaa 39422064  T
Q  324 tttcttttcttttgattcgagctccttcagttggctctcgaaatgcttcttttctgattccagcttct 391  Q
    |||||||||| |||||||||| ||||||||| |||| || ||||||||||||||||||||||||||||    
T  39422065 tttcttttctattgattcgagatccttcagtcggctttcaaaatgcttcttttctgattccagcttct 39422132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 49 - 365
Target Start/End: Complemental strand, 39215675 - 39215359
Alignment:
Q  49 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgtt 148  Q
    ||||||| ||||| |||| ||| ||||||||||||||||||||    ||| ||   |||||||||||||||||||||| |||| ||||||||||| |||     
T  39215675 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 39215576  T
Q  149 cttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttcttttttgatttaagctccttaacccgacctttgaattcctcctt 248  Q
    |||||||||||||| || ||||||  ||   |||||| |   ||| |||||||||||||||| |  | |||||||||||||| ||||||||||||||||     
T  39215575 cttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttcttttttaaactgagctccttaacccggcctttgaattcctcctc 39215476  T
Q  249 cttcgttttaaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctcc 348  Q
     || | || || ||||| ||||||||  ||||||||||||| |||||||||||||||||||  |||| | |  |||| ||||||||| | |||||| | |    
T  39215475 atttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctttggtttcgagattc 39215376  T
Q  349 ttcagttggctctcgaa 365  Q
    |||| ||| ||||||||    
T  39215375 ttcaattgtctctcgaa 39215359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 258 - 395
Target Start/End: Original strand, 39415033 - 39415170
Alignment:
Q  258 aaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttgg 357  Q
    ||||||||||||||| |  || | |||||||||||||||||||||||| |||| | || | || ||||  |||||||||||||| |||||||||||||||    
T  39415033 aaactccttcacttgtcctttgagttcctcctcttttgactggaactctttcattcgttctttgaattgattttcttttgattcaagctccttcagttgg 39415132  T
Q  358 ctctcgaaatgcttcttttctgattccagcttcttcac 395  Q
    || |||||||||||||||||||||||||||| ||||||    
T  39415133 ctttcgaaatgcttcttttctgattccagctccttcac 39415170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 150 - 416
Target Start/End: Complemental strand, 39137782 - 39137516
Alignment:
Q  150 ttcaaattgcttcgctattgatttgaattcctcaaccttggtttta-aattgcttcttttttgatttaagctccttaacccgacctttgaattcctcctt 248  Q
    ||||| ||||||| || |||||||||| |||||||| ||||||||  |||||||||||||||||||| |||||||||||  || ||| ||| ||||| |     
T  39137782 ttcaagttgcttctcttttgatttgaaatcctcaac-ttggttttcgaattgcttcttttttgatttgagctccttaacttgatcttcgaactcctcatc 39137684  T
Q  249 cttcgttttaaactccttcacttg-actgttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctc 347  Q
    ||| | || ||| |||||||| || ||| || |||||||| |||||||||||||||||||||| |||| | | | ||| |||||||| || ||| ||||     
T  39137683 ctttgattcaaaatccttcacgtgtact-ttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcaagctg 39137585  T
Q  348 cttcagttggctctcgaaatgcttcttttctgattccagcttcttcacccacccttcaagttcaccctc 416  Q
    |||| || ||||||| |||||||||||||| ||||| || | ||||||||  ||||||| |||| ||||    
T  39137584 cttctgtcggctctcaaaatgcttcttttcagattcgagttccttcaccctgccttcaaattcatcctc 39137516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 352
Target Start/End: Original strand, 39414886 - 39415043
Alignment:
Q  195 aaattgcttcttttttgatttaagctccttaacccgacctttgaattcctccttcttcgttttaaactccttcacttgactgttaaattcctcctctttt 294  Q
    ||||||||||| ||||||||| || ||||||||  |||||||||| ||||||| ||| | || |||||||||||||||||  || |||||| ||||||||    
T  39414886 aaattgcttctcttttgatttgagttccttaacttgacctttgaactcctcctcctttgattcaaactccttcacttgacctttgaattccccctctttt 39414985  T
Q  295 gactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttca 352  Q
    || ||||||||||||| |||| |  | |||||||||||||||||||| | ||||||||    
T  39414986 gagtggaactccttcatttgttctctgaatttcttttcttttgattcaaactccttca 39415043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 322 - 457
Target Start/End: Complemental strand, 39152396 - 39152261
Alignment:
Q  322 aatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttcttttctgattccagcttcttcacccacccttcaagttcaccctcctttg 421  Q
    |||| ||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   ||||||| |||| |||| ||||    
T  39152396 aattccttttccattgattcgagctccttcagtcggctctcgaaatgcttcttttctgattccagcttcttcacctggccttcaaattcatcctcttttg 39152297  T
Q  422 gttctaaccctttcactctgacatcaagttgcttct 457  Q
     ||| ||||| |||||||   |||||||||| ||||    
T  39152296 attcaaaccccttcactcgtccatcaagttgtttct 39152261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 39414770 - 39414914
Alignment:
Q  37 agctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagtt 136  Q
    ||||||||||| |||||||  |||| |||||||| ||| ||||| |||||||||||    || || | || ||||||||||||||| |||| || |||||    
T  39414770 agctttgactcaggatccttaacttgtccttcaaactgtttctcatttaacttgagctctttgaccagtagtttgaacttattctcatttgtcttgagtt 39414869  T
Q  137 ctttccatcgttcttcaaattgcttcgctattgatttgaattcct 181  Q
    |||||||||||||||||||||||||| || ||||||||| |||||    
T  39414870 ctttccatcgttcttcaaattgcttctcttttgatttgagttcct 39414914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 246 - 457
Target Start/End: Original strand, 39487689 - 39487900
Alignment:
Q  246 cttcttcgttttaaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagc 345  Q
    |||||| ||||||||||||||||| || |   | ||||||||||||||||||||||||||||||| |||| | | |  || |||||||| || |||||||    
T  39487689 cttctttgttttaaactccttcacgtgtcctctgaattcctcctcttttgactggaactccttcatttgttcttcatgttgcttttcttgtgcttcgagc 39487788  T
Q  346 tccttcagttggctctcgaaatgcttcttttctgattccagcttcttcacccacccttcaagttcaccctcctttggttctaaccctttcactctgacat 445  Q
    |||||| || |||||||  ||||||||||||| |||||  ||| ||||||||  ||||||| |||| |||| |||   | |||| | |||| || | |||    
T  39487789 tccttctgtcggctctcagaatgcttcttttcagattcgggctccttcacccggccttcaaattcatcctcttttaactttaactccttcattcggccat 39487888  T
Q  446 caagttgcttct 457  Q
    ||||||||||||    
T  39487889 caagttgcttct 39487900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 39137869 - 39137759
Alignment:
Q  105 tactttgaacttattctcttttgactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttc 204  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||||||| | ||||| || | | ||| || |||||||    
T  39137869 tactttgaacttattctcttttgactcgagttctttccaccgttcttcaatttgcttctcttttgatttgtaatcctcgacttggctttcaagttgcttc 39137770  T
Q  205 ttttttgattt 215  Q
    | |||||||||    
T  39137769 tcttttgattt 39137759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 39192440 - 39192615
Alignment:
Q  49 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgtt 148  Q
    ||||||| ||||  |||||||| |||||| |||||||| |||||   ||||||  || ||||||||||||||||||||||||| |||||  ||||||||     
T  39192440 ggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtc 39192539  T
Q  149 cttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttcttttttgatttaagctcctt 224  Q
    |||| ||||||||| || |||||||||| ||||| || |   ||||||| ||||||||| | |||| ||| |||||    
T  39192540 cttctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttctttctagattcaagttcctt 39192615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 39198120 - 39198295
Alignment:
Q  49 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgtt 148  Q
    ||||||| ||||  |||||||| |||||| |||||||| |||||   ||||||  || ||||||||||||||||||||||||| |||||  ||||||||     
T  39198120 ggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtc 39198219  T
Q  149 cttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttcttttttgatttaagctcctt 224  Q
    |||| ||||||||| || |||||||||| ||||| || |   ||||||| ||||||||| | |||| ||| |||||    
T  39198220 cttctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttctttctagattcaagttcctt 39198295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 68 - 235
Target Start/End: Original strand, 39397868 - 39398035
Alignment:
Q  68 caacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgttcttcaaattgcttcgctat 167  Q
    |||||||||||||||||||||  ||   || |||  |||||||||||| ||||||||||||||| |||| |||||| |||||||||| ||||||  || |    
T  39397868 caacctgcttctcttttaactcaagctcctgcacctttactttgaactgattctcttttgactcaagttttttccaccgttcttcaatttgcttatcttt 39397967  T
Q  168 tgatttgaattcctcaaccttggttttaaattgcttcttttttgatttaagctccttaacccgacctt 235  Q
    ||||||||| |||||||| | | ||| ||| ||||| |||| | |||  ||||||||||| |||||||    
T  39397968 tgatttgaaatcctcaacttggctttcaaagtgcttattttgtaattcgagctccttaactcgacctt 39398035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 39421814 - 39421945
Alignment:
Q  31 ttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgact 130  Q
    ||||||||||| ||||||||||||| ||||  | || |||   |||| |||||||| |||||    ||||||| ||||||||||||||||||||||||||    
T  39421814 ttatttagcttcgactcgggatccttgactagtgctccaaatcgcttgtcttttaatttgagctctttcactagtactttgaacttattctcttttgact 39421913  T
Q  131 cgagttctttccatcgttcttcaaattgcttc 162  Q
     ||||||||||||| |||||||||||| ||||    
T  39421914 tgagttctttccattgttcttcaaatttcttc 39421945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 383
Target Start/End: Complemental strand, 44614713 - 44614607
Alignment:
Q  277 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt 376  Q
    |||||||||||||||| |||||||||||||||||||  ||  | ||||| ||||||||||||||| |  |||||  || |||||||||||||||||||||    
T  44614713 ttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctttt 44614614  T
Q  377 ctgattc 383  Q
    |||||||    
T  44614613 ctgattc 44614607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 39381492 - 39381624
Alignment:
Q  30 tttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgac 129  Q
    ||||||||||||||| || ||||||| | ||| || ||||| |||||||||||||||||||||    ||||   |||||||||||| ||||||||||||     
T  39381492 tttatttagctttgaatcaggatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaactcattctcttttgat 39381591  T
Q  130 tcgagttctttccatcgttcttcaaattgcttc 162  Q
    ||| ||||||||  |||||||||||||| ||||    
T  39381592 tcgtgttctttcattcgttcttcaaatttcttc 39381624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 235
Target Start/End: Complemental strand, 39468379 - 39468196
Alignment:
Q  52 tcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgttctt 151  Q
    |||| ||||| |||||||| ||||||||||||||||||||    ||||||  |||||||||||  ||||||||||||||  | |||||| || ||||| |    
T  39468379 tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaaccgattctcttttgacttcaattctttacaccgttcat 39468280  T
Q  152 caaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttcttttttgatttaagctccttaacccgacctt 235  Q
    ||||||||||  || |||||||||| |||||||| |   | | ||| |  |||||||||||||  ||||||||||| |||||||    
T  39468279 caaattgcttatcttttgatttgaaatcctcaacttgactgtcaaaatatttcttttttgattcgagctccttaactcgacctt 39468196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 39222928 - 39222763
Alignment:
Q  49 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgtt 148  Q
    ||||||| ||||| |||||||| |  ||| ||||| || |||||   ||||||  || |||||||||||||||||| |||||| ||||  ||||||||||    
T  39222928 ggatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttattccatcgtt 39222829  T
Q  149 cttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttcttttttgatt 214  Q
    |||||||||||||| || ||||||| || ||||| || | | |||  || ||||||||||||||||    
T  39222828 cttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttcttttttgatt 39222763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 39389109 - 39389302
Alignment:
Q  21 tccatcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattc 120  Q
    |||||||  |||||| ||||||||||| ||||| | |||||  ||||||| |||||| |||||||| |||||   ||||||  ||||||||||||||| |    
T  39389109 tccatcaaatttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcacctttactttgaacttatac 39389208  T
Q  121 tcttttgactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttcttttttgatt 214  Q
    |||||  |||| ||||| |||||||||  || |||| ||| | || |||||||||| |||||||| | | |||| || |||| ||||| |||||    
T  39389209 tctttcaactccagttcgttccatcgtcttttaaatcgctgctcttttgatttgaagtcctcaacttggcttttcaaatgctccttttgtgatt 39389302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 39369920 - 39369835
Alignment:
Q  301 aactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttcttttctgattccag 386  Q
    |||||||||  |||||| | ||||| ||||||||||||||||||||||| ||||  |||||||| |||||||||||| ||||||||    
T  39369920 aactccttcttttgtccttcaaattgcttttcttttgattcgagctcctgcagtctgctctcgatatgcttcttttccgattccag 39369835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 39370090 - 39369953
Alignment:
Q  110 tgaacttattctcttttgactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttcttttt 209  Q
    ||||||| ||||||||| |||| ||||||||||| ||| |||||||||||||  || | |||||||| | ||| || | ||||| |||||||||| |||     
T  39370090 tgaacttgttctcttttaactcaagttctttccaccgtccttcaaattgcttttctttcgatttgaagtgctcgacttgggtttcaaattgcttcctttc 39369991  T
Q  210 tgatttaagctccttaacccgacctttgaattcctcct 247  Q
    ||| || | ||||||||| |||||||  ||||||||||    
T  39369990 tgacttgaactccttaactcgaccttcaaattcctcct 39369953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 39381639 - 39381737
Alignment:
Q  219 ctccttaacccgacctttgaattcctccttcttcgttttaaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgtcc 317  Q
    |||||||||  ||||||||| |||||||||||| | |||||  ||||||||||  |  | |||||||||||||||| | || |||||||||| ||||||    
T  39381639 ctccttaacttgacctttgagttcctccttctttgatttaatttccttcactttgccttcaaattcctcctcttttaattgaaactccttcatttgtcc 39381737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 39389346 - 39389424
Alignment:
Q  279 aaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttgg 357  Q
    |||||||||||||||||| || ||||||||||||| ||| |  |||||||  |||||||| || |||||||||| ||||    
T  39389346 aaattcctcctcttttgattgaaactccttcacttttccttcgaatttctcctcttttgactcaagctccttcatttgg 39389424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 39487655 - 39487689
Alignment:
Q  128 actcgagttctttccatcgttcttcaaattgcttc 162  Q
    |||||||||||||||||| ||||||||||||||||    
T  39487655 actcgagttctttccatctttcttcaaattgcttc 39487689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 39124668 - 39124615
Alignment:
Q  105 tactttgaacttattctcttttgactcgagttctttccatcgttcttcaaattg 158  Q
    |||||||||||  ||||||| ||||||||| |||||||||||| |||| |||||    
T  39124668 tactttgaactccttctcttctgactcgagctctttccatcgtccttctaattg 39124615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 39130426 - 39130365
Alignment:
Q  291 ttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttca 352  Q
    |||||||||||||||||||| | |||| |  |||||||| | || |||||||||||||||||    
T  39130426 ttttgactggaactccttcaatcgtccttcgaatttcttcttttctgattcgagctccttca 39130365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 2361576 - 2361524
Alignment:
Q  195 aaattgcttcttttttgatttaagctccttaacccgacctttgaattcctcct 247  Q
    |||||||||||||||||||| ||||||||| ||| | | || |||||||||||    
T  2361576 aaattgcttcttttttgattcaagctccttcacctgcctttcgaattcctcct 2361524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 39451858 - 39451794
Alignment:
Q  331 tcttttgattcgagctccttcagttggctctcgaaatgcttcttttctgattccagcttcttcac 395  Q
    |||||||||| |||||||| || |||||| || |||||||||||||  |||||||| | ||||||    
T  39451858 tcttttgatttgagctcctccacttggctttcaaaatgcttctttttagattccagatccttcac 39451794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 416
Target Start/End: Complemental strand, 19807732 - 19807466
Alignment:
Q  150 ttcaaattgcttcgctattgatttgaattcctcaaccttggtttta-aattgcttcttttttgatttaagctccttaacccgacctttgaattcctcctt 248  Q
    ||||| ||||||| || |||||||||| |||||||| ||||||||  ||||||||||||||| |||| | ||||||||| ||||||| |||  |||| |     
T  19807732 ttcaagttgcttctcttttgatttgaagtcctcaac-ttggttttcgaattgcttctttttttatttgaactccttaactcgaccttcgaacccctcatc 19807634  T
Q  249 cttcgttttaaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctcc 348  Q
    ||| | || ||| |||||||| ||    || |||||||| |||||||||||||||||||||| |||| | | | ||| |||||||| || |||||||  |    
T  19807633 ctttgattcaaaatccttcacgtgtgctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcgagccgc 19807534  T
Q  349 ttcagttggctctcgaaatgcttcttttctgattccagcttcttcacccacccttcaagttcaccctc 416  Q
    ||| || |||||||||||||||||||||| ||||| |||| |||| |||  ||||||| |||| ||||    
T  19807533 ttctgtcggctctcgaaatgcttcttttcagattcgagctccttcgcccggccttcaaattcatcctc 19807466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 19807819 - 19807709
Alignment:
Q  105 tactttgaacttattctcttttgactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttc 204  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||| || |||||||| ||||||| || | | ||| || |||||||    
T  19807819 tactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtattcctcgacttggctttcaagttgcttc 19807720  T
Q  205 ttttttgattt 215  Q
    | |||||||||    
T  19807719 tcttttgattt 19807709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 16113354 - 16113156
Alignment:
Q  37 agctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagtt 136  Q
    |||||||||||  | |||| ||||| | |||||| |||||||||||||||||||||   |||| |  |||||||||||| |||||||||||| |||||||    
T  16113354 agctttgactcaagctccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttgaactgattctcttttgattcgagtt 16113255  T
Q  137 ctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttcttttttgatttaagctccttaacccgacctt 235  Q
    ||||||| |||||||||||||||||  |  |||||||||| | |||||| | | |||  || ||||| ||||||||||  | ||||||||| |||||||    
T  16113254 ctttccaccgttcttcaaattgcttatcgtttgatttgaaatactcaacttggctttccaaatgcttattttttgattcgatctccttaactcgacctt 16113156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 373
Target Start/End: Complemental strand, 33560847 - 33560754
Alignment:
Q  280 aattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttct 373  Q
    ||||||||||||||||| || ||||||||||||||||| || |||||||  |||||||| ||||||||||||| |||| | |||| ||||||||    
T  33560847 aattcctcctcttttgattgaaactccttcacttgtcctttgaatttctcctcttttgactcgagctccttcatttggttttcgacatgcttct 33560754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 44951214 - 44951305
Alignment:
Q  277 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatg 368  Q
    ||||||||||||||||||||||| ||||||||| ||||| | || ||||| |||||| ||||||| | |||||||| | || ||||||||||    
T  44951214 ttaaattcctcctcttttgactgaaactccttctcttgttctttgaatttattttctcttgattcaaactccttcattcggatctcgaaatg 44951305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 4321 - 4257
Alignment:
Q  277 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattc 341  Q
    ||||||||||||||||||||||| ||||||||| ||||||| || ||| |||||||| |||||||    
T  4321 ttaaattcctcctcttttgactgaaactccttctcttgtcctttgaatatcttttctcttgattc 4257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 51574996 - 51574944
Alignment:
Q  331 tcttttgattcgagctccttcagttggctctcgaaatgcttcttttctgattc 383  Q
    |||||||||| ||| ||||||| |||||| || ||||||||||||||||||||    
T  51574996 tcttttgatttgagttccttcacttggctttcaaaatgcttcttttctgattc 51574944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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