View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8918_low_16 (Length: 430)
Name: NF8918_low_16
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 22 - 420
Target Start/End: Complemental strand, 41103546 - 41103148
Alignment:
| Q |
22 |
gaagctttgtacaatctcggagttgagaatttgagtttttctcaaattcagaaaatggactgggaaatgcttgaatataaaatcaagtgttggttaaacg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41103546 |
gaagctttgtacaatctcggagttgagaatttgagtttttctcaaattcagaaaatggactgggaaatgcttgaatataaaatgaagtgttggttaaacg |
41103447 |
T |
|
| Q |
122 |
ccgtcaaagtcgccgttaacactctgtttcacggcgagagaatactctgcaattatattttcgattcgccggagaagaacaacatcggagaatcgtgttt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103446 |
ccgtcaaagtcgccgttaacactctgtttcacggcgagagaatactctgcaattatattttcgattcgccggagaagaacaacatcggagaatcgtgttt |
41103347 |
T |
|
| Q |
222 |
cgctgatatttgcagagaaagcgcactgatgctgtttgcattcccggaaaacgtggcaaaatgcaagaaaactccggagaaaatgttcagaacgcttgat |
321 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103346 |
cgctgatatttgcagagaaagcgcattaatgctgtttgcattcccggaaaacgtggcaaaatgcaagaaaactccggagaaaatgttcagaacgcttgat |
41103247 |
T |
|
| Q |
322 |
ttatacgaagcgatttcagaaaattggaatcaaattgaatcaattttttcgtcggaatcaaactcaccgatcagatcgcaagtcgttgcttcacaggtt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103246 |
ttatacgaagcgatttcagaaaattggaatcaaattgaatcaattttttcgtcggaatcaaactcaccgatcagatcgcaagtcgttgcttcacaggtt |
41103148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 23129108 - 23129044
Alignment:
| Q |
277 |
gcaaaatgcaagaaaactccggagaaaatgttcagaacgcttgatttatacgaagcgatttcaga |
341 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
23129108 |
gcaaaatgcaagaaaactcctgagaaaatgttcagaactcttgatttatacgaagcaatttcaga |
23129044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University