View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_20 (Length: 402)
Name: NF8918_low_20
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 34593604 - 34593238
Alignment:
| Q |
18 |
atattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaattacta |
117 |
Q |
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| T |
34593604 |
atattcgtgcaatggataataccacatatgaattaataactaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaattacta |
34593505 |
T |
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| Q |
118 |
gaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatctaattttccttctgttattgcagataaactaggagttcaagg |
217 |
Q |
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| T |
34593504 |
gaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatcaaattttccttctgttattgcagacaaactaggagttcaagg |
34593405 |
T |
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| Q |
218 |
aaagaaagtgaaaagtactaatgatttggaggtaattttcttgttttttgatcccatgatttcatacactatccnnnnnnnnnaataaaatttttgaggt |
317 |
Q |
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| T |
34593404 |
aaagaaagtgaaaagtactaatgatttggaggtaactttcttgt-ttttgatcccttgatttcatacactatcctttttttttaataaaatttttgaggt |
34593306 |
T |
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| Q |
318 |
aggcgttagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgat |
385 |
Q |
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| T |
34593305 |
aggcggtagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgtttcctcttgat |
34593238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 34577820 - 34577750
Alignment:
| Q |
17 |
aatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaagg |
87 |
Q |
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| T |
34577820 |
aatattcaagcaatggataataccacatatgaattgataagcaactcagaagttattgcagtaaaccaagg |
34577750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 34577665 - 34577609
Alignment:
| Q |
194 |
tgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
250 |
Q |
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| T |
34577665 |
tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
34577609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 32590053 - 32589981
Alignment:
| Q |
17 |
aatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta |
89 |
Q |
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| T |
32590053 |
aatattcaagcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta |
32589981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 32600501 - 32600429
Alignment:
| Q |
17 |
aatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta |
89 |
Q |
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| T |
32600501 |
aatattcaagcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta |
32600429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 32589905 - 32589846
Alignment:
| Q |
191 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
250 |
Q |
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| T |
32589905 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32589846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 32600353 - 32600294
Alignment:
| Q |
191 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
250 |
Q |
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||||||||||||||| |||||||| ||||||||||| ||||| | |||||||| ||||| |
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| T |
32600353 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32600294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 24884037 - 24884099
Alignment:
| Q |
193 |
ttgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt |
255 |
Q |
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| T |
24884037 |
ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt |
24884099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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