View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_21 (Length: 394)
Name: NF8918_low_21
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 25583441 - 25583819
Alignment:
| Q |
1 |
actggcaacagggtaacctacacttaatgcatgtttggattgactgtgagttttttattaccgtaattttggcaaaaacttcattttgaagcttcaacca |
100 |
Q |
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| T |
25583441 |
actggcaacagggtaacctacacttaatgcatgtttggattgactgtgagttttttattaccgtaattttggcaaaaactacattttgaagcttcaacca |
25583540 |
T |
|
| Q |
101 |
aacgacggcgctactgtgatttcgttaaactcactgtaattccaaacatgcagttaattcctccttttggagttgttgttttcatgatggaaatcaagta |
200 |
Q |
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| T |
25583541 |
aacgacggcgctactgtgatttcgttaaactcactgtaattccaaacatgcagttaattcctccttttggagttgttgttttcatgatggaaatcaagta |
25583640 |
T |
|
| Q |
201 |
aaacagtgcttttgcatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaaccaaccaaaaccatggaagtggcttc |
300 |
Q |
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| T |
25583641 |
aaacagtgcttttacatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaaccaaccaaaaccatggaagtggcttc |
25583740 |
T |
|
| Q |
301 |
tgggctgttagagtatctctgttggttgtttccatcttcttggtttagctcagtggacacacatgaacttggtggggat |
379 |
Q |
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| T |
25583741 |
tgggctgttagagtatctctgttggttgtttccatcttcttggtttagctcagtggacacacatgaacttggtggggat |
25583819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 307
Target Start/End: Complemental strand, 42894191 - 42894075
Alignment:
| Q |
191 |
aaatcaagtaaaacagtgcttttgcatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaaccaaccaaaaccatgg |
290 |
Q |
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| T |
42894191 |
aaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaacctactaacagcatgg |
42894092 |
T |
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| Q |
291 |
aagtggcttctgggctg |
307 |
Q |
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| || ||||| |||||| |
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| T |
42894091 |
aggttgcttcagggctg |
42894075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 41696776 - 41696812
Alignment:
| Q |
116 |
gtgatttcgttaaactcactgtaattccaaacatgca |
152 |
Q |
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| T |
41696776 |
gtgatttcgttaaactcactgtcattccaaacatgca |
41696812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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