View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8918_low_23 (Length: 385)
Name: NF8918_low_23
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 6454746 - 6455092
Alignment:
| Q |
20 |
actacaacccttcattcccattttgttcatgctgttcaacttcttggtggtcatgaaagtaagcaatattatcctagataagcacttttatacgataagt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6454746 |
actacaacccttcattcccattttgttcatgctgttcaactacttggtggtcatgaaagtaagcaatattatcctagataagcacttttatacgataagt |
6454845 |
T |
|
| Q |
120 |
gtttattctgtaagtgtttacttaagttctttattcaaatagaatcaatatatacatgattattttgatatgaaatattatcatttcttcttcattatgg |
219 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6454846 |
gtttattctataagcgtttacttaagttctttattcaaatagaatcaatatatacatgattattttgatatgaaatattatcatttcttcttcattatgg |
6454945 |
T |
|
| Q |
220 |
taagaacatgaacatgtccataacaaaatataaggaaaaaacaagattaatgtannnnnnngcttatcttttattacaaggaagtataatataagtatat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6454946 |
aaagaacatgaacatgtccataacaaaatataacgaaaaaacaagattaatgtatttttttgcttatcttttattacaaggaagtataatataag----- |
6455040 |
T |
|
| Q |
320 |
gattatggatcatgttaattaattgtgtaattaaacttgcaggagcaacaccaaa |
374 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6455041 |
---tatggatcatgttagttaattgtgtaattaaacttgcaggagcaacaccaaa |
6455092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 29258804 - 29258844
Alignment:
| Q |
41 |
tttgttcatgctgttcaacttcttggtggtcatgaaagtaa |
81 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
29258804 |
tttgttcatgctgttgagcttcttggtggccatgaaagtaa |
29258844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University