View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_24 (Length: 377)
Name: NF8918_low_24
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 5 - 362
Target Start/End: Original strand, 10032288 - 10032645
Alignment:
| Q |
5 |
ctgaagtggattttgacactggttctgcttcatggaacagtgaagttacaaataatggtggtgttggcgaagttgaattgaattcatcgcgtaaaacggt |
104 |
Q |
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| T |
10032288 |
ctgaagtggattttgacactggttctgcttcatggaacagtgaagttacaaataatggtggtgttggcgaagttgaattgaattcatcgcgtaaaacggt |
10032387 |
T |
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| Q |
105 |
gaaagtacggttctcgtgtggcggtcctcaggtgcttccgtcaagctttgaaaacgatggtaaggttatggtgaagaccgggagtaatggttctggttcc |
204 |
Q |
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| T |
10032388 |
gaaagtacggttctcgtgtggcggtcctcaggtgcttccgtcaagctttgaaaacgatggtaaggttatggtgaagaccgggagtaatggttctggttcc |
10032487 |
T |
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| Q |
205 |
ggtcttagttttgacggtgcagatgaaaagattaatgggaatgtgggaaggaggaaagatgtttataggctggaggaatttactttgggtgatattgttt |
304 |
Q |
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| T |
10032488 |
ggtcttagttttgacggtgcagatgaaaagattaatgggaatgtgggaaggaggaaagatgtttataggctggaggaatttactttgggtgatattgttt |
10032587 |
T |
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| Q |
305 |
gggcgaaatgcgggaagaggtttccggcttggcccggtgtggtgattgatcctctctc |
362 |
Q |
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| T |
10032588 |
gggcgaaatgcgggaagaggtttccggcttggcccggtgtggtgattgatcctctctc |
10032645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 48487208 - 48487139
Alignment:
| Q |
288 |
tttgggtgatattgtttgggcgaaatgcgggaagaggtttccggcttggcccggtgtggtgattgatcct |
357 |
Q |
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| T |
48487208 |
tttgggtgatattgtttgggcaaaatgtggcaagacttttccggcatggcctgctgttgtcattgatcct |
48487139 |
T |
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