View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_25 (Length: 366)
Name: NF8918_low_25
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 2 - 357
Target Start/End: Original strand, 11399071 - 11399426
Alignment:
| Q |
2 |
gtattttaattcaagttagttaaaacagttagatttgttagcaactgttttggaagttggttagaagagtagttgcttgttttacaagttagttacatat |
101 |
Q |
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| T |
11399071 |
gtattttaattcaagttagttaaaacagttagatttgttagcaactgttttggaagttggttagaagagtagttgcttgttttacaagttagttacatat |
11399170 |
T |
|
| Q |
102 |
gcttagtataaattattgtaatgttcacttttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctctat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11399171 |
gcttagtataaattattgtaatgttcacttttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctctat |
11399270 |
T |
|
| Q |
202 |
aaatcattcatttcttgagtaacaagtaattgctgtgctaacaaaaacacccaacttcaaatccacgaccatcctctacaaaacagaacagcagcgattt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11399271 |
aaatcattcatttcttgagtaacaagtaattgctgtgctaacaaaaacacccaacttcaaatccacgaccatcctctacaaaacagaacagcagcgattt |
11399370 |
T |
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| Q |
302 |
gggaacatacaatgacaattatatacgaactcacccatttggcttcaacaccaaac |
357 |
Q |
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| T |
11399371 |
gggaacatacaatgacaattatatacgaactcacccatttggcttcaactccaaac |
11399426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 36612699 - 36612830
Alignment:
| Q |
2 |
gtattttaattcaagttagttaaaacagttagatttgttagcaactgttttggaagttggttagaagagtagttgcttgttttacaagttagttacatat |
101 |
Q |
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| T |
36612699 |
gtattttaatttaagttagttaaaacagttaggtttgttgtcaactgttttagaagttggttag-agagcggttgcttgctttac-agttagttacacat |
36612796 |
T |
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| Q |
102 |
gcttagtataaattattgtaatgttcacttttca |
135 |
Q |
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| T |
36612797 |
gcttggtataaatgattatagtgttcacttttca |
36612830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 36614006 - 36614047
Alignment:
| Q |
148 |
aatatagaattacaatcatttgtatctatctcttttctctct |
189 |
Q |
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| T |
36614006 |
aatatagaattacaatccattgcatctatctcttttctctct |
36614047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 30915288 - 30915356
Alignment:
| Q |
131 |
tttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctct |
199 |
Q |
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|
| T |
30915288 |
tttcattcactaatgagaatatagaattacaatctattgcatatatctcttatctctctcaatttctct |
30915356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 30904475 - 30904543
Alignment:
| Q |
131 |
tttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctct |
199 |
Q |
| |
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||||||||| || ||||||||||||||||||||| ||| || |||||||| ||||||||||||||||| |
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| T |
30904475 |
tttcattcattaatgagaatatagaattacaatctattgcatatatctcttctctctctcaatttctct |
30904543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 8156201 - 8156319
Alignment:
| Q |
131 |
tttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctctataaatcattcatttcttgagtaacaag-ta |
229 |
Q |
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|||||||||||| ||||||||||||||||||||| || ||||| |||||| |||||||||||||| ||||||||| || || |||||||||| | |
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| T |
8156201 |
tttcattcactaatgagaatatagaattacaatccattcaatctaactcttt--tctctcaatttctccctaaatcatttgttgctagagtaacaagaaa |
8156298 |
T |
|
| Q |
230 |
attgctgtgctaacaaaaaca |
250 |
Q |
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|||| |||||||||| ||||| |
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| T |
8156299 |
attgttgtgctaacacaaaca |
8156319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 43695262 - 43695224
Alignment:
| Q |
2 |
gtattttaattcaagttagttaaaacagttagatttgtt |
40 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
43695262 |
gtattttaattcaagttagttaaaacagttaggtttgtt |
43695224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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