View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_28 (Length: 342)
Name: NF8918_low_28
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 44936989 - 44937297
Alignment:
| Q |
16 |
tactcctaaaagcatgtagaaattcgtcaaacttcagtgctagtcactacatcattaacatcatatgttcaaaattatcctataaatagaaatgtttgtc |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44936989 |
tactcctaaaagcatgtagaaattcgtcaaactttagtgctagtcactacatcattaacatcatatgttcaaaattatcctataaatagaaatgtttgtc |
44937088 |
T |
|
| Q |
116 |
tgataaccaatccaactacattcttttacaaacaaattttctcttgtgatacattatatagttaatactaccacttgcacaacattatgtctaagctttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44937089 |
tgataaccaatccaactacattcttttacaaacaaattttttcttgtgatacattatatcgttaatactaccacttgcacaacattatgtctaagctttc |
44937188 |
T |
|
| Q |
216 |
acgtaatgttataatgcacgttgttttattaaccataataatcactggaatagtagatggnnnnnnngttaaaaattgtggcggtagaggaaaagataga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44937189 |
acgtaatgttataatgcacgttgttttattaaccataataatcactggaatagtagatggaaaaaaagttaaaaattgtggcggtagaggaaaagataga |
44937288 |
T |
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| Q |
316 |
ggaacaaaa |
324 |
Q |
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||||||||| |
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| T |
44937289 |
ggaacaaaa |
44937297 |
T |
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