View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8918_low_3 (Length: 640)
Name: NF8918_low_3
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 13 - 623
Target Start/End: Original strand, 33964382 - 33964991
Alignment:
| Q |
13 |
atggacatcaagataattatgcttcaaaaaatttaggtaagcgttacaagatctttgctcaannnnnnncccattccttaatttctaagagcatagaagg |
112 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
33964382 |
atggacttcaagata-ttatgcttcaaaaattttaggtaagcgttacaagatctttgctcaatttttttcccattccttactttctaagagcatagaagg |
33964480 |
T |
|
| Q |
113 |
tgtaccatcctactatatagctatccaaggcctaagaaaatgataagaactagatctagttaccaatgttccattcctcctcgtctgatgatgatcctac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33964481 |
tgtaccatcctactatatagctatccaaggcctaagaaaatgacaagaactagacctagttaccagtgttccattcctcctcgtctgatgatgatcctac |
33964580 |
T |
|
| Q |
213 |
aaccaaatcgggtgacctcatcacaagagaggccgttctatccgtagcatggaagaccggtccaaaaaacaaaccgtgttcatcataacaattgtattga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33964581 |
aaccaaatcgggtgacctcatcacaagagaagccgttctatccgtagcatggaagaccggtccaaaacacaaaccgtgttcatcataacaattgtattga |
33964680 |
T |
|
| Q |
313 |
tcaggaaaatgcccttcatttgaaatgacctcctctactgtatccttatagattaagatggttttgataatgtgtcaactgctccctcagttttgagttt |
412 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33964681 |
ttaggaaaatgcccttaatttgaaatgacctcctctactgtatccttatagattaggatggttttgataatgtgtcaactgctccctcagttttgagttt |
33964780 |
T |
|
| Q |
413 |
gttgaaaatgtgtgttcttacatcaaaaaccattagagagaaatgattgaaatattttagagagaagggctgctaattttaagctatagaatgaaagaat |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33964781 |
gttgaaaatgtgtgttcttacatcaaaaaccattagagagaaatgattgaaatattttagagagaagggctgctaattttaagctatagaatgaaagaat |
33964880 |
T |
|
| Q |
513 |
ggtaggagttaagtgtggtttaagtttttgagagaaaaatatgatcatataaaaacgagtattagataggagaatggttaaatttgagtttgaaataatt |
612 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33964881 |
ggtaggagttaagtgtggtttatgtttttcagagaaaaatatgatcatataaaaacgagtattagataggaaaatggttaaatttgagtttgaaataatt |
33964980 |
T |
|
| Q |
613 |
ttctttgtatg |
623 |
Q |
| |
|
||||||||||| |
|
|
| T |
33964981 |
ttctttgtatg |
33964991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University