View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_30 (Length: 329)
Name: NF8918_low_30
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 41711269 - 41711588
Alignment:
| Q |
1 |
ttcaatgaaaacaaaagtattatcattagtcaccgttacataatgttatctcctctgtatggtcaccaagccaagaccattaaaactaaattttgcctca |
100 |
Q |
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| T |
41711269 |
ttcaatgaaaacaaaagtattatcattagtccccgttacataatgttatctcctctgtatggtcaccaagccaagaccattaaaactaaattttgcctca |
41711368 |
T |
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| Q |
101 |
aataggttgtgctatattgtaatgtaatttggctataaatatttatgttacgttctttaccatatttcatacacacttctttcttattgattttatttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41711369 |
aataggttgtgctatattgtaatgtaatttggctataaatatttatgttatgttctttaccatatttcatacagacttctttcttattgattttatttca |
41711468 |
T |
|
| Q |
201 |
tacaaactattagcatttccacgtcatatgtatttgatcaagcaaaataaatcatccatggggtggttggttgtttttatgtttagttcttttactcttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41711469 |
tacaaactattagcatttccacgtcatatgtatttgatcaagcaaaataaatcatccatgggg----tggttgtttttatgtttagttcttttactcttc |
41711564 |
T |
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| Q |
301 |
aattttccatatttctctgcttct |
324 |
Q |
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|||||||||||||||||| ||||| |
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| T |
41711565 |
aattttccatatttctcttcttct |
41711588 |
T |
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