View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8918_low_33 (Length: 324)

Name: NF8918_low_33
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8918_low_33
NF8918_low_33
[»] chr6 (7 HSPs)
chr6 (2-309)||(26892715-26893022)
chr6 (73-204)||(26950564-26950695)
chr6 (61-156)||(26824628-26824723)
chr6 (73-214)||(26724389-26724530)
chr6 (73-203)||(29843218-29843348)
chr6 (168-269)||(28235481-28235582)
chr6 (110-214)||(26618515-26618619)
[»] chr2 (1 HSPs)
chr2 (73-309)||(3280480-3280716)
[»] chr5 (1 HSPs)
chr5 (73-300)||(16691688-16691915)
[»] chr1 (1 HSPs)
chr1 (79-217)||(26136715-26136853)
[»] scaffold0038 (1 HSPs)
scaffold0038 (168-269)||(35643-35744)


Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 2 - 309
Target Start/End: Complemental strand, 26893022 - 26892715
Alignment:
Q  2 ttggaggtgtgggcaaaacaacacttgtacgggtagtttataattttattgcatgccattttgaagccttttgttttcttcacaacgtgagagaaaattc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26893022 ttggaggtgtgggcaaaacaacacttgtacgggtagtttataatttgattgcatgccattttgaagctttttgttttcttcacaacgtgagagaaaattc 26892923  T
Q  102 cgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttaggagatgtggatgaaggaatttcaatcata 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26892922 cgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttaggagatgtggatgaaggaatttcaatcata 26892823  T
Q  202 aaaaagaggctacatcgaaaaagggttctattggttttagatgatgttgacgaattaaagcaactgcaattcattgctggaggactcgattggtttggta 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26892822 aaaaagaggctacatcgaaaaagggttctattggttttagatgatgttgacgaattaaagcaactgcaattcattgctggtggactcgattggtttggta 26892723  T
Q  302 ttggtagt 309  Q
    ||||||||    
T  26892722 ttggtagt 26892715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 26950564 - 26950695
Alignment:
Q  73 tgttttcttcacaacgtgagagaaaattccgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttag 172  Q
    |||||||||||||| |||||||||||||| | ||| ||||| |||||  | ||||||||| |||||||||| ||| |||| |||||  | | || ||| |    
T  26950564 tgttttcttcacaatgtgagagaaaattcagtaaaacatggcttagagtatctccaagagcagctcctctccaaatcaatcggatttgaaactaagtttg 26950663  T
Q  173 gagatgtggatgaaggaatttcaatcataaaa 204  Q
    || ||||  ||||||||||| |||||||||||    
T  26950664 gacatgttaatgaaggaattccaatcataaaa 26950695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 26824628 - 26824723
Alignment:
Q  61 tttgaagccttttgttttcttcacaacgtgagagaaaattccgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattgga 156  Q
    |||||||  |||||||||||| | ||||||||||| ||||| || |||||||| || ||||| ||||||||| | ||||| | |||||||||||||    
T  26824628 tttgaagttttttgttttcttgagaacgtgagagagaattcagctaagcatggcttggaaaatctccaagagcaactccttttaaaaacaattgga 26824723  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 26724389 - 26724530
Alignment:
Q  73 tgttttcttcacaacgtgagagaaaattccgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttag 172  Q
    ||||| |||||||| ||||||||||||||    ||  |||| |||||| | |||||||||||||||||||| |||  ||| |||||| |  ||| ||| |    
T  26724389 tgtttccttcacaatgtgagagaaaattcaattaaatatggcttagaatatctccaagagaagctcctctccaaattaatcggattggaatttaagttcg 26724488  T
Q  173 gagatgtggatgaaggaatttcaatcataaaaaagaggctac 214  Q
    |||||||   |||||| ||||||||||||||| | |||||||    
T  26724489 gagatgttagtgaagggatttcaatcataaaacacaggctac 26724530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 29843348 - 29843218
Alignment:
Q  73 tgttttcttcacaacgtgagagaaaattccgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttag 172  Q
    |||||||||||| ||| |||||||| ||| || || ||||| |||||  | |||||||||||||| || || |||||| |||  ||| | |||| | |||    
T  29843348 tgttttcttcacgacgggagagaaagttcagctaaacatggcttagagcatctccaagagaagcttctttccaaaacagttgatttggacattaagctag 29843249  T
Q  173 gagatgtggatgaaggaatttcaatcataaa 203  Q
    |||||||  ||||||||||| |||| |||||    
T  29843248 gagatgttaatgaaggaattccaataataaa 29843218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 28235481 - 28235582
Alignment:
Q  168 gttaggagatgtggatgaaggaatttcaatcataaaaaagaggctacatcgaaaaagggttctattggttttagatgatgttgacgaattaaagcaactg 267  Q
    ||||||||||||  |||| |||||| ||||||||||  | ||||| || ||||| | |||||| ||| || ||||||||||| ||||| |||||||| ||    
T  28235481 gttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccgaaagaaggttctgttgattctagatgatgttcacgaactaaagcaattg 28235580  T
Q  268 ca 269  Q
    ||    
T  28235581 ca 28235582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 26618515 - 26618619
Alignment:
Q  110 atggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttaggagatgtggatgaaggaatttcaatcataaaaaagag 209  Q
    |||| |||||| | |||||||||||||||||||| |||  ||| |||||| |  ||| ||| ||||||||   |||||| ||||||||||||||| | ||    
T  26618515 atggcttagaatatctccaagagaagctcctctccaaattaatcggattggaatttaagttcggagatgttagtgaagggatttcaatcataaaacacag 26618614  T
Q  210 gctac 214  Q
    |||||    
T  26618615 gctac 26618619  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 309
Target Start/End: Original strand, 3280480 - 3280716
Alignment:
Q  73 tgttttcttcacaacgtgagagaaaattccgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttag 172  Q
    |||||||||||||| |||||||||||||| ||||| |||||| ||||  | |||||| || |  | || || |||||  |||||||| | |||| |||||    
T  3280480 tgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttag 3280579  T
Q  173 gagat-gtggatgaaggaatttcaatcataaaaaagaggctacatcgaaaaagggttctattggttttagatgatgttgacgaattaaagcaactgcaat 271  Q
    ||||| || | ||| |||||| ||||||||||  | |||||||| || |||| ||||||||||||| | ||||| ||| ||||||| |||||  |||||     
T  3280580 gagatagtag-tgagggaattccaatcataaagcaaaggctacaccggaaaaaggttctattggttcttgatgacgttaacgaattgaagcaggtgcaag 3280678  T
Q  272 tcattgctggaggactcgattggtttggtattggtagt 309  Q
    || | |||||||| || ||||||||| || ||||||||    
T  3280679 tcttagctggagggcttgattggtttagtgttggtagt 3280716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 300
Target Start/End: Original strand, 16691688 - 16691915
Alignment:
Q  73 tgttttcttcacaacgtgagagaaaattccgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttag 172  Q
    |||||||||||  ||||||||||||||||  | || ||||| |||||| | || ||||| | |||||| || ||||| ||||||||  | |||| |||||    
T  16691688 tgttttcttcatgacgtgagagaaaattcatctaaacatggcttagaacatcttcaagaaaggctcctttccaaaaccattggattagacattaagttag 16691787  T
Q  173 gagatgtggatgaaggaatttcaatcataaaaaagaggctacatcgaaaaagggttctattggttttagatgatgttgacgaattaaagcaactgcaatt 272  Q
    || ||||   |||||||||| |||| |||||| | |||||||| | ||||| |||||| ||| || | ||||||||||| ||   ||||||| ||||| |    
T  16691788 gacatgttagtgaaggaattccaataataaaacaaaggctacaacaaaaaaaggttcttttgattctcgatgatgttgatgagcaaaagcaattgcaagt 16691887  T
Q  273 cattgctggaggactcgattggtttggt 300  Q
     || | |||||  | |||||||||||||    
T  16691888 tatggttggagagcccgattggtttggt 16691915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 217
Target Start/End: Original strand, 26136715 - 26136853
Alignment:
Q  79 cttcacaacgtgagagaaaattccgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttaggagatg 178  Q
    |||||||| ||| |||||||||| |  ||  |||| |||||| | ||||||||| |||||||||| ||| |||| |||||| | |||| ||||||| |||    
T  26136715 cttcacaatgtgcgagaaaattcagttaaatatggcttagaatatctccaagagcagctcctctccaaatcaatcggattggagattaagttaggacatg 26136814  T
Q  179 tggatgaaggaatttcaatcataaaaaagaggctacatc 217  Q
    |   | |||||||| ||||||||||| | ||||||||||    
T  26136815 ttagtaaaggaattccaatcataaaagaaaggctacatc 26136853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 35643 - 35744
Alignment:
Q  168 gttaggagatgtggatgaaggaatttcaatcataaaaaagaggctacatcgaaaaagggttctattggttttagatgatgttgacgaattaaagcaactg 267  Q
    ||||||||||||  |||| |||||| ||||||||||  | ||||| || ||||| | |||||| ||| || ||||||||||| ||||| |||||||| ||    
T  35643 gttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccgaaagaaggttctgttgattctagatgatgttcacgaactaaagcaattg 35742  T
Q  268 ca 269  Q
    ||    
T  35743 ca 35744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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