View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8918_low_35 (Length: 318)

Name: NF8918_low_35
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8918_low_35
NF8918_low_35
[»] chr4 (1 HSPs)
chr4 (18-312)||(42467278-42467571)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 42467278 - 42467571
Alignment:
Q  18 ttaatttacttgtttaaatacaccacggttatatatttttatctgttgtgattaattttccacaatcaaagagactttttgttagttttacaaatctgaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42467278 ttaatttacttgtttaaatacaccacggttatatatttttatctgttgtgattaattttccacaatcaaagagactttttgttagttttacaaatctgaa 42467377  T
Q  118 agtgaaatgtaaactcaatgtaatcgagagattaaattaatcactatgcaatgatattatcaaattcattacatatatctctaatcaaatcacatcgtaa 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42467378 agtgaaatgtaaactcaatgtaatcgagagattaa-ttaatcactatgcaatgatattatcaaattctttacatatatctctaatcaaatcacatcgtaa 42467476  T
Q  218 catcacttaattcgctgaattaattcttaaaacaactccataaaatgtacatggtgagatgtgattgtatcattatttagaatcctctctgcttc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42467477 catcacttaattcgctgaattaattcttaaaacaactccataaaatgtacatggtgagatgtgattgtatcattatttagaatcctctttgcttc 42467571  T

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