View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8918_low_4 (Length: 627)

Name: NF8918_low_4
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8918_low_4
NF8918_low_4
[»] chr8 (8 HSPs)
chr8 (56-306)||(40481956-40482206)
chr8 (354-494)||(40482254-40482395)
chr8 (583-619)||(40482524-40482560)
chr8 (432-494)||(3650514-3650576)
chr8 (443-489)||(24202156-24202202)
chr8 (436-494)||(10982724-10982782)
chr8 (432-473)||(42541873-42541914)
chr8 (429-493)||(40795368-40795432)
[»] chr3 (4 HSPs)
chr3 (430-494)||(33634490-33634554)
chr3 (429-473)||(28808173-28808217)
chr3 (436-485)||(45309157-45309206)
chr3 (430-494)||(38330757-38330821)
[»] chr4 (5 HSPs)
chr4 (431-494)||(50668333-50668396)
chr4 (430-481)||(19283960-19284011)
chr4 (431-473)||(37970200-37970242)
chr4 (438-492)||(47704582-47704636)
chr4 (431-459)||(44221440-44221468)
[»] scaffold0086 (1 HSPs)
scaffold0086 (431-472)||(19082-19123)
[»] chr7 (4 HSPs)
chr7 (437-494)||(25251509-25251566)
chr7 (436-494)||(23177940-23177998)
chr7 (432-472)||(2702838-2702878)
chr7 (424-460)||(24839474-24839510)
[»] chr2 (1 HSPs)
chr2 (431-486)||(38334637-38334692)
[»] chr1 (5 HSPs)
chr1 (431-494)||(1091172-1091235)
chr1 (432-494)||(24978238-24978300)
chr1 (431-473)||(37573313-37573355)
chr1 (436-473)||(28213911-28213948)
chr1 (438-494)||(32870244-32870300)
[»] chr5 (2 HSPs)
chr5 (436-494)||(33369418-33369476)
chr5 (430-494)||(14681259-14681323)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-129; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 56 - 306
Target Start/End: Original strand, 40481956 - 40482206
Alignment:
Q  56 aggtttaggacggttggtcaccttatgcctcatatacgaccctgatatattctaaccgctgagacaagtaatatagctccatagtcgtatcttaccgttt 155  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  40481956 aggtttaggacggttgatcaccttatgcctcatatacgaccctgatatattctgaccgctgagacaagtaatatagctccatagtcatatcttaccgttt 40482055  T
Q  156 gtcatctctagtcatttgaatttttcgccaccagtggcatggcatttaaaatatttccttggcttcaataattttggcttgacttatttcagttcgggta 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40482056 gtcatctctagtcatttgaatttttcgccaccagtggcatggcatttaaaatatttccttggcttcaataattttggcttgacttatttcagttcgggta 40482155  T
Q  256 tagtaatacttttagcacttagtgttggtgttggctttaggaaagataggg 306  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40482156 tagtaatacttgtagcacttagtgttggtgttggctttaggaaagataggg 40482206  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 354 - 494
Target Start/End: Original strand, 40482254 - 40482395
Alignment:
Q  354 ccgtatttttataccgttgtctagctannnnnnnn-gtttgaaaaacatttttctatcgagaaacaaagacataatattgtcatcgtgagcttaattcag 452  Q
    |||||||||||||||||||||||||||         ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||| ||    
T  40482254 ccgtatttttataccgttgtctagctatttttttttgtttgaaaaacttttttctatcgagaaacaaagacataacattgtcctcgtgagcttaatttag 40482353  T
Q  453 ttggtataaataatatataatgtatataaggttcggggttca 494  Q
    |||||||| ||||||||||||||||  ||||| |||||||||    
T  40482354 ttggtatagataatatataatgtatgcaaggtccggggttca 40482395  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 583 - 619
Target Start/End: Original strand, 40482524 - 40482560
Alignment:
Q  583 ccactcaaactaatacaaccgtcatcaagtataatct 619  Q
    |||||||||||||||||||||||||||||||||||||    
T  40482524 ccactcaaactaatacaaccgtcatcaagtataatct 40482560  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 494
Target Start/End: Original strand, 3650514 - 3650576
Alignment:
Q  432 gtcatcgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    |||||||||||||||| |||||||||| ||| |||  ||||| ||| ||||||||||||||||    
T  3650514 gtcatcgtgagcttaactcagttggtagaaaaaatgcataatatatgtaaggttcggggttca 3650576  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 489
Target Start/End: Original strand, 24202156 - 24202202
Alignment:
Q  443 cttaattcagttggtataaataatatataatgtatataaggttcggg 489  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||||    
T  24202156 cttaattcagttggtataaacaatacataatatatataaggttcggg 24202202  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 10982724 - 10982782
Alignment:
Q  436 tcgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    |||||||||||| |||||||||||  | |||||||||| |||  |||||||||||||||    
T  10982724 tcgtgagcttaactcagttggtatggacaatatataatatatgcaaggttcggggttca 10982782  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 42541914 - 42541873
Alignment:
Q  432 gtcatcgtgagcttaattcagttggtataaataatatataat 473  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||    
T  42541914 gtcatcgtgagcttaattcagttagtagaaacaatatataat 42541873  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 493
Target Start/End: Original strand, 40795368 - 40795432
Alignment:
Q  429 attgtcatcgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttc 493  Q
    |||||||| |||||||||| ||||||||||| || |||| ||||| |||  ||||| ||||||||    
T  40795368 attgtcattgtgagcttaactcagttggtatgaacaatacataatatatgcaaggtccggggttc 40795432  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 430 - 494
Target Start/End: Original strand, 33634490 - 33634554
Alignment:
Q  430 ttgtcatcgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    ||||||||||||| |||| | ||||||||||||||||||||||| ||| ||||||||||||||||    
T  33634490 ttgtcatcgtgagtttaacttagttggtataaataatatataatatatgtaaggttcggggttca 33634554  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 473
Target Start/End: Complemental strand, 28808217 - 28808173
Alignment:
Q  429 attgtcatcgtgagcttaattcagttggtataaataatatataat 473  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||    
T  28808217 attgtcctcgtgagcttaattcagttggtatagataatacataat 28808173  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 485
Target Start/End: Complemental strand, 45309206 - 45309157
Alignment:
Q  436 tcgtgagcttaattcagttggtataaataatatataatgtatataaggtt 485  Q
    |||||||||||| |||||||||||||| ||| |||||| |||| ||||||    
T  45309206 tcgtgagcttaactcagttggtataaacaatttataatatatacaaggtt 45309157  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 38330821 - 38330757
Alignment:
Q  430 ttgtcatcgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    ||||| |||||||||||  ||| |||||||||| |||||||||| |||  |||||||||| ||||    
T  38330821 ttgtcttcgtgagcttagctcaattggtataaacaatatataatatatgcaaggttcgggattca 38330757  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 494
Target Start/End: Original strand, 50668333 - 50668396
Alignment:
Q  431 tgtcatcgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    |||| |||||| ||||||||||||||||| || |||| ||||| ||| ||||||||||||||||    
T  50668333 tgtcttcgtgaacttaattcagttggtatgaacaatacataatatatgtaaggttcggggttca 50668396  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 481
Target Start/End: Complemental strand, 19284011 - 19283960
Alignment:
Q  430 ttgtcatcgtgagcttaattcagttggtataaataatatataatgtatataa 481  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||  |||||||    
T  19284011 ttgtcctcgtgagcttaattcagttggtataaacaatacataaaatatataa 19283960  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 473
Target Start/End: Complemental strand, 37970242 - 37970200
Alignment:
Q  431 tgtcatcgtgagcttaattcagttggtataaataatatataat 473  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||    
T  37970242 tgtcatcgtgaacttaattcagttggtataaaaaatgtataat 37970200  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 438 - 492
Target Start/End: Original strand, 47704582 - 47704636
Alignment:
Q  438 gtgagcttaattcagttggtataaataatatataatgtatataaggttcggggtt 492  Q
    |||||||||| ||||||||||| |||||| |||||| ||| ||||||||| ||||    
T  47704582 gtgagcttaactcagttggtatgaataatgtataatatatgtaaggttcgaggtt 47704636  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 459
Target Start/End: Original strand, 44221440 - 44221468
Alignment:
Q  431 tgtcatcgtgagcttaattcagttggtat 459  Q
    |||||||||||||||||||||||||||||    
T  44221440 tgtcatcgtgagcttaattcagttggtat 44221468  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 472
Target Start/End: Complemental strand, 19123 - 19082
Alignment:
Q  431 tgtcatcgtgagcttaattcagttggtataaataatatataa 472  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  19123 tgtcatcgtgagcttaactcagttggtataaacaatatataa 19082  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 25251509 - 25251566
Alignment:
Q  437 cgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    ||||||||||| |||||||||||||| |||  ||||| ||||||||||| ||||||||    
T  25251509 cgtgagcttaactcagttggtataaacaatgcataatatatataaggtttggggttca 25251566  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 23177940 - 23177998
Alignment:
Q  436 tcgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    ||||||||||||||| |||| |||||||||| |||||| |||| |||||| | ||||||    
T  23177940 tcgtgagcttaattcggttgatataaataatgtataatatatacaaggttagtggttca 23177998  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 2702878 - 2702838
Alignment:
Q  432 gtcatcgtgagcttaattcagttggtataaataatatataa 472  Q
    ||||||||||| |||| ||||||||||| ||||||||||||    
T  2702878 gtcatcgtgagtttaactcagttggtatgaataatatataa 2702838  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 24839474 - 24839510
Alignment:
Q  424 ataatattgtcatcgtgagcttaattcagttggtata 460  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  24839474 ataatattgtcctcgtgagcttaactcagttggtata 24839510  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 486
Target Start/End: Original strand, 38334637 - 38334692
Alignment:
Q  431 tgtcatcgtgagcttaattcagttggtataaataatatataatgtatataaggttc 486  Q
    |||| ||||||| |||||||| ||||||| ||||||||||||| ||| ||||||||    
T  38334637 tgtcctcgtgagattaattcaattggtatgaataatatataatatatgtaaggttc 38334692  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 494
Target Start/End: Original strand, 1091172 - 1091235
Alignment:
Q  431 tgtcatcgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    |||| |||||||||||| |||||||||||| | |||  |||||||||  |||||||||||||||    
T  1091172 tgtcctcgtgagcttaactcagttggtatagacaatgcataatgtatgcaaggttcggggttca 1091235  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 494
Target Start/End: Original strand, 24978238 - 24978300
Alignment:
Q  432 gtcatcgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    |||||||||||||||| |||||||||||| |||||| ||||| |||  ||||||  |||||||    
T  24978238 gtcatcgtgagcttaactcagttggtatagataatacataatatatgcaaggtttagggttca 24978300  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 473
Target Start/End: Original strand, 37573313 - 37573355
Alignment:
Q  431 tgtcatcgtgagcttaattcagttggtataaataatatataat 473  Q
    |||| |||||||||||| |||||||||||||||||| ||||||    
T  37573313 tgtcctcgtgagcttaactcagttggtataaataatgtataat 37573355  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Original strand, 28213911 - 28213948
Alignment:
Q  436 tcgtgagcttaattcagttggtataaataatatataat 473  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  28213911 tcgtgagcttaattcagttgatatacataatatataat 28213948  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 494
Target Start/End: Original strand, 32870244 - 32870300
Alignment:
Q  438 gtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    ||||||||||||| ||||||| |||| ||||||||| ||| |||||| || ||||||    
T  32870244 gtgagcttaattcggttggtagaaatgatatataatatatgtaaggtccgtggttca 32870300  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 494
Target Start/End: Complemental strand, 33369476 - 33369418
Alignment:
Q  436 tcgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    |||||||||||| ||||||||||| || |||| |||||||||  || ||||||||||||    
T  33369476 tcgtgagcttaactcagttggtatgaacaatacataatgtatgcaacgttcggggttca 33369418  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 14681323 - 14681259
Alignment:
Q  430 ttgtcatcgtgagcttaattcagttggtataaataatatataatgtatataaggttcggggttca 494  Q
    ||||||||||||| |||| | |||||||| | |||||  ||||| |||| |||||||||||||||    
T  14681323 ttgtcatcgtgagtttaacttagttggtaaagataatgcataatatatagaaggttcggggttca 14681259  T

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