View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8918_low_43 (Length: 269)

Name: NF8918_low_43
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8918_low_43
NF8918_low_43
[»] chr3 (6 HSPs)
chr3 (11-254)||(21330357-21330600)
chr3 (118-176)||(21323735-21323793)
chr3 (187-232)||(45620961-45621006)
chr3 (184-232)||(25944446-25944494)
chr3 (187-227)||(35417896-35417936)
chr3 (193-232)||(46421169-46421209)
[»] chr7 (5 HSPs)
chr7 (187-232)||(13805060-13805105)
chr7 (189-232)||(3469311-3469354)
chr7 (187-232)||(19266408-19266453)
chr7 (187-232)||(23419806-23419851)
chr7 (187-224)||(28362285-28362322)
[»] chr1 (9 HSPs)
chr1 (185-227)||(50760363-50760405)
chr1 (189-232)||(25554854-25554897)
chr1 (187-234)||(31442507-31442554)
chr1 (190-232)||(6983941-6983983)
chr1 (194-232)||(20036208-20036246)
chr1 (186-232)||(50811919-50811965)
chr1 (187-224)||(15511291-15511328)
chr1 (187-232)||(52910198-52910243)
chr1 (187-227)||(43207470-43207510)
[»] chr2 (3 HSPs)
chr2 (188-228)||(35017776-35017816)
chr2 (187-232)||(4516483-4516528)
chr2 (187-227)||(35010505-35010545)
[»] chr8 (1 HSPs)
chr8 (187-233)||(44781637-44781683)
[»] chr6 (1 HSPs)
chr6 (187-232)||(13905111-13905156)
[»] chr5 (3 HSPs)
chr5 (187-232)||(209059-209104)
chr5 (187-232)||(39301081-39301126)
chr5 (190-226)||(39079904-39079940)
[»] chr4 (4 HSPs)
chr4 (187-232)||(54966979-54967024)
chr4 (193-232)||(16911525-16911565)
chr4 (187-227)||(20908775-20908815)
chr4 (187-227)||(25343145-25343185)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 21330600 - 21330357
Alignment:
Q  11 cagagacactcaactgagaaagctcatggatgattatagtgatcatatctctacagagcatgaattagtaannnnnnnngttgacgggcgccgcctccat 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||    
T  21330600 cagaaacactcaactgagaaagctcatggatgattatagtgatcatatctctacggagcatgaattagtaaatttttttgttgacgggcgccgcctccat 21330501  T
Q  111 gaatggcagactccaaatgaggtttgtgtttgctgacgtatgtttcgtttcaatactagaaatgtttcgtttctaaggggagccttggcgcaatggtaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21330500 gaatggcagactccaaatgaggtttgtgtttgctgacgtatgtttcgtttcaatactagaaatgtttcgtttctaaggggagccttggcgcaatggtaaa 21330401  T
Q  211 gtggttgtcatgtgacttaaagtcatagtttcaatccctagaaa 254  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  21330400 gtggttgtcatgtgacttaaagtcacagtttcaatccctagaaa 21330357  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 21323793 - 21323735
Alignment:
Q  118 agactccaaatgaggtttgtgtttgctgacgtatgtttcgtttcaatactagaaatgtt 176  Q
    |||||||||||||||||||||||||||||| ||||||| ||||  ||||||||||||||    
T  21323793 agactccaaatgaggtttgtgtttgctgacatatgttttgttttgatactagaaatgtt 21323735  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 45621006 - 45620961
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||||||||||||||| |||||||| ||||||| |||||| ||||    
T  45621006 ggggagccttggcgcaacggtaaagttgttgtcacgtgactgaaag 45620961  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 25944446 - 25944494
Alignment:
Q  184 taaggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||||||||||||||||||  ||||||| ||||||| |||||| ||||    
T  25944446 taaggggagccttggcgcaacagtaaagttgttgtcacgtgactgaaag 25944494  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 35417896 - 35417936
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgact 227  Q
    ||||||||||||||||| |||||||| ||| ||||||||||    
T  35417896 ggggagccttggcgcaacggtaaagttgttatcatgtgact 35417936  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 46421209 - 46421169
Alignment:
Q  193 ccttggcgcaa-tggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  46421209 ccttggcgcaactggtaaagttgttgtcatgtgacttaaag 46421169  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 13805060 - 13805105
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||    
T  13805060 ggggagccttggcgcaatggtaaagttgttgtcatgtgactgaaag 13805105  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 3469354 - 3469311
Alignment:
Q  189 ggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||    
T  3469354 ggagccttggcgcaacggtaaagttgttgtcatgtgactgaaag 3469311  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 19266408 - 19266453
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    |||||||||||| |||| |||||||| |||||||||||||| ||||    
T  19266408 ggggagccttggtgcaacggtaaagttgttgtcatgtgactgaaag 19266453  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 23419851 - 23419806
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||||||||||||||| |||||||| | |||||||||||| ||||    
T  23419851 ggggagccttggcgcaacggtaaagttgctgtcatgtgactaaaag 23419806  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 28362322 - 28362285
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtg 224  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  28362322 ggggagccttggcgcaacggtaaagttgttgtcatgtg 28362285  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 50760405 - 50760363
Alignment:
Q  185 aaggggagccttggcgcaatggtaaagtggttgtcatgtgact 227  Q
    ||||||||||||||||||| |||||||| ||||||||||||||    
T  50760405 aaggggagccttggcgcaaaggtaaagtagttgtcatgtgact 50760363  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 25554897 - 25554854
Alignment:
Q  189 ggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||    
T  25554897 ggagccttggcgcaatggtaaagttgttgtcacgtgactaaaag 25554854  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 31442554 - 31442507
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaagtc 234  Q
    ||||||||||||||||| |||||||| |||||||||||| || |||||    
T  31442554 ggggagccttggcgcaacggtaaagttgttgtcatgtgagttcaagtc 31442507  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 6983983 - 6983941
Alignment:
Q  190 gagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  6983983 gagccttggcgcaatggtaaagttgttgtcacgtgactgaaag 6983941  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 20036208 - 20036246
Alignment:
Q  194 cttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  20036208 cttggcgcaatggtaaagttgttgtcatgtgactgaaag 20036246  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 50811919 - 50811965
Alignment:
Q  186 aggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    |||||||||||||||||| |||||||| ||||||| |||||| ||||    
T  50811919 aggggagccttggcgcaacggtaaagttgttgtcacgtgactgaaag 50811965  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 15511328 - 15511291
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtg 224  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  15511328 ggggagccttggcgcaatggtaaagttgttgtaatgtg 15511291  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 52910198 - 52910243
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    |||||||||||| |||| |||||||| |||||||||||||| ||||    
T  52910198 ggggagccttggtgcaacggtaaagttgttgtcatgtgactgaaag 52910243  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 43207470 - 43207510
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgact 227  Q
    ||||||||||||||||| |||||||| ||||||| ||||||    
T  43207470 ggggagccttggcgcaacggtaaagttgttgtcacgtgact 43207510  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 35017776 - 35017816
Alignment:
Q  188 gggagccttggcgcaatggtaaagtggttgtcatgtgactt 228  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  35017776 gggagccttggcgcaacggtaaagttgttgtcatgtgactt 35017816  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 4516528 - 4516483
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||||||||||||||| |||||||| ||||||| |||||| ||||    
T  4516528 ggggagccttggcgcaacggtaaagttgttgtcacgtgactgaaag 4516483  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 35010505 - 35010545
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgact 227  Q
    |||||||||||| |||| |||||||| ||||||||||||||    
T  35010505 ggggagccttggtgcaacggtaaagttgttgtcatgtgact 35010545  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 44781683 - 44781637
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaagt 233  Q
    ||||||||||||||||| |||||||| ||||||| |||||| |||||    
T  44781683 ggggagccttggcgcaacggtaaagttgttgtcacgtgactgaaagt 44781637  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 13905156 - 13905111
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||| ||||||||||| |||||||| |||||||||||||| ||||    
T  13905156 ggggaaccttggcgcaacggtaaagttgttgtcatgtgactgaaag 13905111  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 209104 - 209059
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||||||||||||||  |||||||| |||||||||||||| ||||    
T  209104 ggggagccttggcgcagcggtaaagttgttgtcatgtgactaaaag 209059  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 39301081 - 39301126
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||||||||||||||| |||||||| |||||||||| ||| ||||    
T  39301081 ggggagccttggcgcaacggtaaagttgttgtcatgttactgaaag 39301126  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 39079940 - 39079904
Alignment:
Q  190 gagccttggcgcaatggtaaagtggttgtcatgtgac 226  Q
    |||||||||||||| |||||||| |||||||||||||    
T  39079940 gagccttggcgcaacggtaaagttgttgtcatgtgac 39079904  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 54966979 - 54967024
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||| ||||||||||| |||||||| |||||||||||||| ||||    
T  54966979 ggggaaccttggcgcaacggtaaagttgttgtcatgtgactgaaag 54967024  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 16911525 - 16911565
Alignment:
Q  193 ccttggcgcaa-tggtaaagtggttgtcatgtgacttaaag 232  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  16911525 ccttggcgcaactggtaaagttgttgtcatgtgacttaaag 16911565  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 20908815 - 20908775
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgact 227  Q
    ||||||||||||| ||| |||||||| ||||||||||||||    
T  20908815 ggggagccttggcacaacggtaaagttgttgtcatgtgact 20908775  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 25343145 - 25343185
Alignment:
Q  187 ggggagccttggcgcaatggtaaagtggttgtcatgtgact 227  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  25343145 ggggaggcttggcgcaatggtaaagttgttgtcacgtgact 25343185  T

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