View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_46 (Length: 261)
Name: NF8918_low_46
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 41201101 - 41200871
Alignment:
| Q |
16 |
caatttaccaggccaaccggtgactatgtcacggaacttcatgtcaggatcaactattgcttgcaaaaccatgctgtggttgtttctatgatcaagccac |
115 |
Q |
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| T |
41201101 |
caatttaccaggccaaccggtgactatgtcacggaacttcatgtcaggatcaactattgcttgcaaaaccatgctgtggttgtttctatgatcaagccac |
41201002 |
T |
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| Q |
116 |
acatcactcgaatgatcagttgcaggtaaacacattgtgatgtgagtagcatcaacagcgccacagcaattcgggaatccttgtattttctcaaattttg |
215 |
Q |
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| T |
41201001 |
acatcacttgaatgatcagttgcaggtaaacacattgtgatgtgagtagcatcaacagcgccacagcaattcgggaatccttgtattttctcaaattttg |
41200902 |
T |
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| Q |
216 |
acttgattgcattcatttcctcttgcgttga |
246 |
Q |
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| T |
41200901 |
acttgattgcattcatttcctcttgcgttga |
41200871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 41211147 - 41210920
Alignment:
| Q |
19 |
tttaccaggccaaccggtgactatgtcacggaacttcatgtcaggatcaactattgcttgcaaaaccatgctgtggttgtttctatgatcaagccacaca |
118 |
Q |
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| T |
41211147 |
tttacctggccaaccagttactatgtcgcggaacttcatgtcaggatcaactattgcttgcaaaaccatgctgtgattgtttttatgatcaagccacaca |
41211048 |
T |
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| Q |
119 |
tcactcgaatgatcagttgcaggtaaacacattgtgatgtgagtagcatcaacagcgccacagcaattcgggaatccttgtattttctcaaattttgact |
218 |
Q |
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| T |
41211047 |
tcacttgattgttcggttgcaggtaacaacattgtgatgtgagtaacatcaacagcgccacaacaattggggaagccttgtattttctcaaattttgact |
41210948 |
T |
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| Q |
219 |
tgattgcattcatttcctcttgcgttga |
246 |
Q |
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| T |
41210947 |
taatggaattcatttcctcttgtgttga |
41210920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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