View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_48 (Length: 241)
Name: NF8918_low_48
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 52140290 - 52140465
Alignment:
| Q |
63 |
acatcttgatctttcatagcaacacgacatgtttggtcacggttcataggtcgtgagcattgatcacacgatgtaataccataagtgcatccatttggac |
162 |
Q |
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| T |
52140290 |
acattttgatctttcatagcaacatgacgtgtttcgtcccggttcataggttgcgagcattgatcacacgatgtaataccataagtgcatccatttggac |
52140389 |
T |
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| Q |
163 |
acatgtaaagcgaggttcctagattgtgatcatcatttggaatcgttggatcaaagagaacataattctggttgag |
238 |
Q |
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| T |
52140390 |
acatgtaaaccgagattcctagactgtgatcatcatttggaattgttggatcaaagagaacataattctggttgag |
52140465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 52130629 - 52130680
Alignment:
| Q |
30 |
tgaataaccaaatcatccatcaacatgaaagttacatcttgatctttcatag |
81 |
Q |
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| T |
52130629 |
tgaatcactaaatcatccatcaacatgaaaattacattttgatctttcatag |
52130680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 17525380 - 17525251
Alignment:
| Q |
108 |
ataggtcgtgagcattgatcacacgatgtaataccataagtgcatccatttggacacatgtaaagcgaggttcctagattgtgatcatcatttggaatcg |
207 |
Q |
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|||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |
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| T |
17525380 |
ataggttgcgagcattgatc-cacgatgtaataccttaagtgcatccatttggacacatgtaaaacgaggttcctaggctgtgatcatcatttggaattg |
17525282 |
T |
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| Q |
208 |
ttggatcaaagagaacataattctggttgag |
238 |
Q |
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| T |
17525281 |
ttggatcgaagagaacgtaattttggttgag |
17525251 |
T |
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