View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_5 (Length: 560)
Name: NF8918_low_5
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 41200925 - 41200378
Alignment:
| Q |
1 |
atccttgtattttctcaaattttggcttgactgcatacatttcctcgtgcgttgaaggccattgaaggtgatgaagccctctgtcctccatggattccac |
100 |
Q |
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| T |
41200925 |
atccttgtattttctcaaattttgacttgattgcattcatttcctcttgcgttgaaggccattgaaggtgatgaagccctctgtcctccatggattccac |
41200826 |
T |
|
| Q |
101 |
aaatcgccatgttacttgtgaaacagttgagtaggttagcccaaatgaatcgccaactgtgacaagcgagtcgccagatcctaatctcctcagtgccacg |
200 |
Q |
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| T |
41200825 |
aaatcgccatgttacttgtgaaacagttgagtaggttagcccaaatgaatcgccaactgtgacaagcgagtcgccagatcctaatctcctcagtgccacg |
41200726 |
T |
|
| Q |
201 |
gctacttgatcaaataaagacattggctttccgtttgtaaatgtcaaatgcgcggattttgttgtcatatcgtccttgacaagtgaacatatgtactcaa |
300 |
Q |
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| T |
41200725 |
gctacttgatcaaataaagacattggctttccgtttgtaaatgtcaaatgcgcggattttgttgtcatatcgtccttgacaagtgaacatatgtactcaa |
41200626 |
T |
|
| Q |
301 |
acgtctttctcgatatcattggtggtgacttctgaagacctgccaatcaacacaagttctaaggtttgaggaaactatttatacacgaatctgaagaaaa |
400 |
Q |
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| T |
41200625 |
acgtctttctcgatatcattggtggtgacttctgaagacctgccaataaacacaagttctaaggtttgaggaaactatttatacacgaatctgaagaaaa |
41200526 |
T |
|
| Q |
401 |
tacagtaagagaaaaacaagcatacaactaaattatcatcatagtttaagacaataacatgcctgagttgcagcaatgcataacaatgatactaaaatga |
500 |
Q |
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| T |
41200525 |
tacagtaagagaaaaacaagcatacaactaaattatcatcatagtttaagacaataacatgcctgagttgcagcaatgcataacaatgatactaaaatga |
41200426 |
T |
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| Q |
501 |
tttagattaaaagattagagagtgactgtgagaaaacctcatctgatg |
548 |
Q |
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| T |
41200425 |
tttagattaaaagattagagagtgactgtgagaaaacctcatctgatg |
41200378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 3 - 360
Target Start/End: Complemental strand, 41210972 - 41210615
Alignment:
| Q |
3 |
ccttgtattttctcaaattttggcttgactgcatacatttcctcgtgcgttgaaggccattgaaggtgatgaagccctctgtcctccatggattccacaa |
102 |
Q |
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|||||||||||||||||||||| ||| | | || ||||||||| || |||||||||||||| ||||||||||||||||| || ||||||||||| |||| |
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| T |
41210972 |
ccttgtattttctcaaattttgacttaatggaattcatttcctcttgtgttgaaggccattgcaggtgatgaagccctctctcttccatggattcaacaa |
41210873 |
T |
|
| Q |
103 |
atcgccatgttacttgtgaaacagttgagtaggttagcccaaatgaatcgccaactgtgacaagcgagtcgccagatcctaatctcctcagtgccacggc |
202 |
Q |
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| T |
41210872 |
atcgccatgttacttgcgaaacggttgagtggcttagaccaaatgaatcaccaattgtaacaaacgagtctccggatcctaatcttctcaatgccacggc |
41210773 |
T |
|
| Q |
203 |
tacttgatcaaataaagacattggctttccgtttgtaaatgtcaaatgcgcggattttgttgtcatatcgtccttgacaagtgaacatatgtactcaaac |
302 |
Q |
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| T |
41210772 |
cacttgatcagttaaagacactggctttccgtttgaaaacgagaaatgagaggatttttttgcaatatcatccttgacaagtgaacatatgtactcaaac |
41210673 |
T |
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| Q |
303 |
gtctttctcgatatcattggtggtgacttctgaagacctgccaatcaacacaagttct |
360 |
Q |
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||||||| || |||||||| |||| ||||||||||||||| ||| ||||| |||||| |
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| T |
41210672 |
gtctttcgggagatcattggcggtgccttctgaagacctgcaaatgaacactagttct |
41210615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 481
Target Start/End: Complemental strand, 41210585 - 41210545
Alignment:
| Q |
441 |
atagtttaagacaataacatgcctgagttgcagcaatgcat |
481 |
Q |
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| T |
41210585 |
atagtttaagacagtaacatgcctgagttgcagcaatgcat |
41210545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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