View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_50 (Length: 228)
Name: NF8918_low_50
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 24589147 - 24589113
Alignment:
| Q |
95 |
acacacgaatccttttgtaagatccatagttaagg |
129 |
Q |
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| T |
24589147 |
acacacgaatccttttgtaagatccatagttaagg |
24589113 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Complemental strand, 24589063 - 24589032
Alignment:
| Q |
179 |
caaccaccaacaataccaacaaagcgcgttac |
210 |
Q |
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| T |
24589063 |
caaccaccaacaataccaacaaagcgcgttac |
24589032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24589241 - 24589213
Alignment:
| Q |
1 |
taataaaaattgaaaatgaatataatatt |
29 |
Q |
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| T |
24589241 |
taataaaaattgaaaatgaatataatatt |
24589213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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