View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8918_low_53 (Length: 209)

Name: NF8918_low_53
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8918_low_53
NF8918_low_53
[»] chr3 (10 HSPs)
chr3 (18-195)||(10554956-10555133)
chr3 (18-199)||(55291827-55292008)
chr3 (18-187)||(46722812-46722981)
chr3 (17-195)||(43929040-43929218)
chr3 (18-195)||(10833524-10833702)
chr3 (18-195)||(43549881-43550040)
chr3 (18-195)||(6805147-6805324)
chr3 (138-194)||(36528015-36528071)
chr3 (138-195)||(3264808-3264865)
chr3 (155-195)||(17670032-17670072)
[»] chr2 (6 HSPs)
chr2 (18-195)||(20590508-20590685)
chr2 (18-195)||(149733-149910)
chr2 (18-195)||(41301155-41301336)
chr2 (26-193)||(1383880-1384047)
chr2 (37-195)||(28345282-28345439)
chr2 (37-193)||(36734691-36734846)
[»] chr4 (8 HSPs)
chr4 (21-195)||(16277516-16277690)
chr4 (21-194)||(53387126-53387299)
chr4 (23-195)||(35660535-35660707)
chr4 (91-195)||(630162-630266)
chr4 (26-178)||(19434894-19435046)
chr4 (23-124)||(14549368-14549469)
chr4 (20-97)||(16296617-16296693)
chr4 (144-195)||(14549315-14549366)
[»] chr7 (19 HSPs)
chr7 (18-195)||(14105653-14105830)
chr7 (21-194)||(17505193-17505366)
chr7 (21-194)||(17547848-17548021)
chr7 (18-195)||(14415670-14415847)
chr7 (18-195)||(13647931-13648108)
chr7 (18-195)||(19194840-19195017)
chr7 (42-195)||(44190459-44190612)
chr7 (18-183)||(4325757-4325922)
chr7 (18-195)||(708741-708918)
chr7 (18-195)||(39431413-39431591)
chr7 (18-195)||(12754892-12755069)
chr7 (18-195)||(16462725-16462902)
chr7 (23-195)||(25942126-25942298)
chr7 (37-195)||(37539097-37539254)
chr7 (23-124)||(47975124-47975225)
chr7 (64-195)||(24270214-24270345)
chr7 (138-195)||(11309806-11309863)
chr7 (137-195)||(47975220-47975278)
chr7 (155-195)||(15720438-15720478)
[»] chr5 (12 HSPs)
chr5 (19-195)||(24738153-24738329)
chr5 (19-195)||(24750922-24751098)
chr5 (19-192)||(24668384-24668557)
chr5 (18-195)||(18419101-18419278)
chr5 (83-195)||(24617174-24617286)
chr5 (83-195)||(24746433-24746545)
chr5 (18-195)||(36508970-36509147)
chr5 (83-195)||(24713405-24713517)
chr5 (18-195)||(16604790-16604967)
chr5 (18-88)||(24594289-24594359)
chr5 (152-195)||(26762090-26762133)
chr5 (155-195)||(17011415-17011455)
[»] chr1 (8 HSPs)
chr1 (18-195)||(23194738-23194914)
chr1 (18-195)||(45574238-45574415)
chr1 (18-195)||(22130251-22130428)
chr1 (23-195)||(7052246-7052418)
chr1 (18-89)||(24723687-24723758)
chr1 (20-99)||(8306349-8306426)
chr1 (138-192)||(10812867-10812921)
chr1 (153-195)||(44892136-44892178)
[»] chr8 (6 HSPs)
chr8 (18-195)||(25483660-25483837)
chr8 (18-195)||(36732711-36732887)
chr8 (23-195)||(22483435-22483606)
chr8 (152-195)||(22207956-22207999)
chr8 (155-195)||(21399399-21399439)
chr8 (155-195)||(21793892-21793932)
[»] scaffold0364 (1 HSPs)
scaffold0364 (18-195)||(7822-7997)
[»] scaffold0151 (1 HSPs)
scaffold0151 (18-195)||(9744-9921)
[»] scaffold0070 (1 HSPs)
scaffold0070 (25-187)||(8754-8916)
[»] scaffold0016 (1 HSPs)
scaffold0016 (18-183)||(174334-174499)
[»] scaffold0334 (1 HSPs)
scaffold0334 (18-195)||(1774-1951)
[»] scaffold0555 (1 HSPs)
scaffold0555 (18-195)||(9017-9194)
[»] scaffold0026 (1 HSPs)
scaffold0026 (18-195)||(21770-21947)
[»] chr6 (3 HSPs)
chr6 (26-195)||(19234774-19234942)
chr6 (47-195)||(35057193-35057340)
chr6 (37-195)||(13285397-13285554)
[»] scaffold0040 (1 HSPs)
scaffold0040 (23-195)||(106394-106566)
[»] scaffold0149 (1 HSPs)
scaffold0149 (18-108)||(21275-21365)
[»] scaffold0086 (1 HSPs)
scaffold0086 (37-159)||(35724-35845)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 10555133 - 10554956
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10555133 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactatttcgc 10555034  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10555033 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccttgttttatgttcttgcgtctgtttcaca 10554956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 55291827 - 55292008
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||    
T  55291827 aatttggtttttttgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcactattagcgaaactccctataactatttcgc 55291926  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcacaggtt 199  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||    
T  55291927 tattagctcacttttcgccattagcgaaattgcccagtgacaacataccctgttttatgttcttgcgtctttttcacaggtt 55292008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 46722812 - 46722981
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  46722812 aatttgttttttttgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactatttcgc 46722911  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtct 187  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  46722912 tattagctcacttttcgccattagcgaacttgcccagtgacagcataccctgttttatgttcttgtgtct 46722981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 43929218 - 43929040
Alignment:
Q  17 gaatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttg 116  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||| |||| |    
T  43929218 gaatttggtttttttgggtgaaaaatgtgcagaaatcgtaacagcaggggaaaaactcgctaggagttcgctattggcgaaacactctgtaacaatttcg 43929119  T
Q  117 ctattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||| |  ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| | |||||||    
T  43929118 ctattagctaacatttcgccattagcgaaattgctcagtgacagcatactctgttttatgttcttgcgtatttttcaca 43929040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 10833524 - 10833702
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  10833524 aatttggtttttttgggtgaaaaatgtgcagaaatcgtaacagcaatggaaaaactcgctaggatttcgctattagcgaaactccctgtaactatttcgc 10833623  T
Q  118 tattagctcagttttcgccattagcgaa-attgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||| ||||||| || ||| || | || ||||||||||||| ||||||||   |||||||||||| |||||||    
T  10833624 tattagctcacttttcgctatcagcaaatactgtccagtgacagcataccctgtttcgcgttcttgcgtctttttcaca 10833702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 43549881 - 43550040
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  43549881 aatttggtttttttgggtgaaaaatgtgcagaaatcgtaacagcaagggaaaaactcgctaggatttcgctattagcgaaactccctgtaactatttcgc 43549980  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||| |||                  |||||||||||||| |||||| ||||||||||||||||||||||| |||||||    
T  43549981 tatcagc------------------gaaattgcccagtggcagcataccctgttttatgttcttgcgtctttttcaca 43550040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 6805147 - 6805324
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| || ||||||| ||||||||||||||||||| | |||||||||||| ||| | ||||||||| ||||||| | ||||||| |||| ||    
T  6805147 aatttggattttttgagtgaaaaatgtgcagaaatcgtaacagtaggggaaaaactcgttagaaattcgctattggcgaaaccctctgtaacaatttcgc 6805246  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||| | |||| || |||| |||||||||  ||||||||||| ||  ||||||||||||||||||| |||||||    
T  6805247 tattagctaactttttgctattaccgaaattgcatagtgacagcatacctagttttatgttcttgcgtctttttcaca 6805324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 36528071 - 36528015
Alignment:
Q  138 ttagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcac 194  Q
    ||||||||||||| | |||||| ||||| |||||| ||||||||||||||| |||||    
T  36528071 ttagcgaaattgcacggtgacaacattctctgtttcatgttcttgcgtctgcttcac 36528015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 3264808 - 3264865
Alignment:
Q  138 ttagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||||||| |||||||| ||||| || ||  ||||| ||||||||||||||||    
T  3264808 ttagcgaaattgcacagtgacatcattctctattgcatgtttttgcgtctgtttcaca 3264865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 17670032 - 17670072
Alignment:
Q  155 tgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  17670032 tgacagcatgccctgtttcatgttcttgcgtctttttcaca 17670072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 20590508 - 20590685
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20590508 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactatttcgc 20590607  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20590608 tattagctcagttttcgccattagcgaaattgaccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 20590685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 149733 - 149910
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| |||||||||| ||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||||| | ||||| | |||| ||    
T  149733 aatttgggttttttgggtgaaaaatgtgcggaaatcgtaacagcaggggagaaactcgctagaagttcgctattagcgaaaccctctgtagcaatttcgc 149832  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||| | |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||    
T  149833 tattagctaacttttcgccattagcgaaattgcacagtgacagcataccctgttttatgttcttgcgtctttttcaca 149910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 41301155 - 41301336
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| |||||||||| ||||||||| |||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  41301155 aatttggattttttgggtgaaaaatgtgcagaagtcgtagtagcaagggaaaaactcgctaggatttcgctattagcgaaactccctgtaactatttcgc 41301254  T
Q  118 tattagctcagttttcgccattagcga----aattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||| ||||||| || |||||    |||||| |||||||||||| || ||||||||||| |||||||  |||||||    
T  41301255 tattagctcacttttcgctatcagcgaaattaattgctcagtgacagcataccttgttttatgtttttgcgtcattttcaca 41301336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 1383880 - 1384047
Alignment:
Q  26 ttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagct 125  Q
    |||| |||||||||| ||||||||||||||||||||| | || ||||||||||| ||||||||||| ||||||  | ||||||| |||| || |||||||    
T  1383880 ttttttgggtgaaaaatgtgcagaaatcgtaacagcaggagagaaactcgctagaagttcgctattggcgaaatcctctgtaacgatttcgcgattagct 1383979  T
Q  126 cagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttca 193  Q
     | ||||||||||||||||||||||  ||||||||||| |||||||| ||||| |||||||| |||||    
T  1383980 aacttttcgccattagcgaaattgcaaagtgacagcataccctgtttcatgtttttgcgtctttttca 1384047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 37 - 195
Target Start/End: Original strand, 28345282 - 28345439
Alignment:
Q  37 aaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagctcagt-tttcgc 135  Q
    |||| |||| |||||||||||||||| ||||||| |||||||| ||||||||||| ||||||  | ||||||| |||| |||| |||| |||  ||||||    
T  28345282 aaaagtgtgtagaaatcgtaacagcatgggaaaa-ctcgctagaagttcgctattggcgaaatcctctgtaacaatttcgctaatagc-cagagtttcgc 28345379  T
Q  136 cattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||||||||| |||||||||||| ||||| || |||||||||  ||| |||||||    
T  28345380 cattagcgaaattgcacagtgacagcataccctgattcatgttcttgtatctttttcaca 28345439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 37 - 193
Target Start/End: Original strand, 36734691 - 36734846
Alignment:
Q  37 aaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagctcagttttcgcc 136  Q
    |||| |||| |||||| ||||||||| ||||||| |||||||| ||||||||||| ||||||  | ||||||| ||||  | | |||||   ||||||||    
T  36734691 aaaagtgtgtagaaattgtaacagcaggggaaaa-ctcgctagaagttcgctattggcgaaatcctctgtaacaatttcaccaatagctagattttcgcc 36734789  T
Q  137 attagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttca 193  Q
    |||||||||||||| | |||||| ||| | ||||||||||||||||||||| |||||    
T  36734790 attagcgaaattgcactgtgacaacatactctgttttatgttcttgcgtctttttca 36734846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 16277516 - 16277690
Alignment:
Q  21 ttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctat 120  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16277516 ttggtttttctgggtgaaaattgtgcagaaatcgcaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactatttcgctat 16277615  T
Q  121 tagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16277616 tagcttagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttccgtctgtttcaca 16277690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 53387126 - 53387299
Alignment:
Q  21 ttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctat 120  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53387126 ttggtttttctgggtgaaaattgtgcagaaatcgtaacagtaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactatttcgctat 53387225  T
Q  121 tagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcac 194  Q
    | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  53387226 tcgctcagttttcgccattagcgaaattgtccagtgacaacattccctgttttatgttcttgcgtctgtttcac 53387299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 35660707 - 35660535
Alignment:
Q  23 ggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctatta 122  Q
    ||||||| | |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||  | ||||||| |||| ||||||     
T  35660707 ggttttttttggtgaaaaatgtgcagaaatcgtaacagcaggggaaaaactcgctagaagttcgctattggcgaaatcctctgtaacaatttcgctattc 35660608  T
Q  123 gctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||| | |||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||| |||||||    
T  35660607 gctaactttttgccattagcgaaattgcacagtgacagcataccatgttttatgttcttgcgtctttttcaca 35660535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 630162 - 630266
Alignment:
Q  91 tagcgaaactccctgtaactattttgctattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtt 190  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  630162 tagcgaaactccctgtaactatttcgctattagctcatttttcgctatcagcgaaattgcccagtgacagcataccctgttttatgttcttgcgtctttt 630261  T
Q  191 tcaca 195  Q
    |||||    
T  630262 tcaca 630266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 19434894 - 19435046
Alignment:
Q  26 ttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagct 125  Q
    |||| |||||||||| ||||||||||||||||||| | |||||||||||||||| |||| |||||| ||||| | | ||||||| |||| ||||||||||    
T  19434894 ttttttgggtgaaaaatgtgcagaaatcgtaacagtaggggaaaaactcgctagaagtttgctattggcgaatccctctgtaacaatttcgctattagct 19434993  T
Q  126 cagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgtt 178  Q
       | ||||| |||||||||||||| |||||||| ||| | ||||||||||||    
T  19434994 acctgttcgctattagcgaaattgcacagtgacaacatactctgttttatgtt 19435046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 14549469 - 14549368
Alignment:
Q  23 ggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctatta 122  Q
    ||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||| ||||| ||||| ||||| | | ||||||| |||| |||||||    
T  14549469 ggtttttttgggtgaaaaatgtgcagaaatcgtaacagtaggggaaaaactcgctagaagttctctattggcgaatccctctgtaacaatttcgctatta 14549370  T
Q  123 gc 124  Q
    ||    
T  14549369 gc 14549368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 16296693 - 16296617
Alignment:
Q  20 tttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaa 97  Q
    |||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||    
T  16296693 tttggttttt-tgggtgaaaaatgtgcagaaattgtaacagtaagggaaaaactcgctagaagttcgctattggcgaa 16296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 14549366 - 14549315
Alignment:
Q  144 aaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||| |||||||    
T  14549366 aaattgcacagtgacaacataccctgttttatgttcttgcgtctttttcaca 14549315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 14105653 - 14105830
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  14105653 aatttggtttttttgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgttaggagttcgctattagcgaaactccctgtaactatttcgc 14105752  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  14105753 tattagctcacttttcgccattagcgaaattgcccagtgacagcattccctattttatgttcttgcgtcagtttcaca 14105830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 17505193 - 17505366
Alignment:
Q  21 ttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctat 120  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |    
T  17505193 ttggtttttctaggtgaaaattgtgcagaaatcgtaacagcatgggaaaaactcgctaggagttcgctattagcaaaactccctgtaactatttcgctct 17505292  T
Q  121 tagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcac 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17505293 tagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcac 17505366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 17548021 - 17547848
Alignment:
Q  21 ttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctat 120  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |    
T  17548021 ttggtttttctaggtgaaaattgtgcagaaatcgtaacagcatgggaaaaactcgctaggagttcgctattagcaaaactccctgtaactatttcgctct 17547922  T
Q  121 tagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcac 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17547921 tagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcac 17547848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 14415670 - 14415847
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14415670 aatttggtttttttgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactatttcgc 14415769  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||    
T  14415770 tattagctcacttttcgccattagcgaacttgcctagtgacagcataccctgttttatgttcttgcgtctttttcaca 14415847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 13648108 - 13647931
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||    
T  13648108 aatttggtttttttgggtgaaaaatgtgcagaaatcgtaacagcaagggaaaaacttgctaggatttcgctattagcgaaactccctgtaactatttcgc 13648009  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||| ||||||| | ||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||    
T  13648008 tattagctcacttttcgctactagcgaaattgcctagtgacagcataccctgttttatgttcttgtgtctttttcaca 13647931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 19195017 - 19194840
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||  | ||||||| |||| ||    
T  19195017 aatttgggttttttgggtgaaaaatgtgcagaaatcgtaacagcaggggaaaaactcgctagaagttcgctattggcgaaatcctctgtaacaatttcgc 19194918  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    || ||||| | |||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||    
T  19194917 tactagctaacttttcgccattagcgaaattgcacagtgatagcataccctgttttatgttcttgcgtctttttcaca 19194840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 44190459 - 44190612
Alignment:
Q  42 tgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagctcagttttcgccattag 141  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||  |||||||| ||||||||||||||| | |||||||||||||    
T  44190459 tgtgcagaaatcataacagcaagggaaaaactcgctaggagttcgctattggcgaaacctcctgtaacaattttgctattagctaacttttcgccattag 44190558  T
Q  142 cgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||| ||||| |||||| |||| ||||||||| |||||||| |||||||    
T  44190559 cgaaattgctcagtggcagcataccctattttatgttattgcgtctttttcaca 44190612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 4325922 - 4325757
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||| ||||  |    
T  4325922 aatttgggttttttaggtgaaaaatgtgcagaaatcgtaacagcaagggaaaaactcgctaggaattcgctattggcgaaacactctgtaacaatttcac 4325823  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgc 183  Q
    |||||||| |  ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  4325822 tattagctaacctttcgccattagcgaaattgctcagtgacagcatatcctgttttatgttcttgc 4325757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 708741 - 708918
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| | |||||||| ||||||||||||||||||||  |||||||||||||||| ||||  ||||| | ||||| | ||||||| |||| ||    
T  708741 aatttgggtttttttggtgaaaaatgtgcagaaatcgtaacagcgggggaaaaactcgctagaagttttctattggtgaaaccctctgtaacaatttcgc 708840  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||| | ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||    
T  708841 tattagctaacttttcgctattagcgaaattgcacagtgacagcataccctgttttatgttcttgcgtctttttcaca 708918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 39431413 - 39431591
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| ||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| | || |||| |||| ||    
T  39431413 aatttggattttttggatgaaaaatgtgcagaaatcgtaacaacaagggaaaaactcgctagaagttcgctattggcgaaaccctctctaacaatttcgc 39431512  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcat-tccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||| | |||| ||| ||||||||||||| |||||||| |||  ||||||||||||||||||||||| |||||||    
T  39431513 tattagctaactttttgccgttagcgaaattgcacagtgacaacatacccctgttttatgttcttgcgtctttttcaca 39431591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 12754892 - 12755069
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| || || |||| ||||||||||||||||||| | |||||||||||||||| |||| ||||||||| |||| | ||||||| |||  ||    
T  12754892 aatttgggttttttgagtaaaaaatgtgcagaaatcgtaacagtaggggaaaaactcgctagaagtttgctattagctaaaccctctgtaacaattgcgc 12754991  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||| |  |||||| |||||||||||||| |||||||||||| |||| ||| |||||||||||||| |||||||    
T  12754992 tattagctaacgtttcgctattagcgaaattgcacagtgacagcataccctatttcatgttcttgcgtctttttcaca 12755069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 16462902 - 16462725
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| |||||||||| |||||||||||||||| || |  ||||||||| | ||| ||||||||||| ||||| | |  |||||| |||| ||    
T  16462902 aatttggtttttttgggtgaaaaatgtgcagaaatcgtaaaagtagtggaaaaacttgatagaagttcgctattggcgaatccctttgtaacaatttcgc 16462803  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||| | ||||||| ||||||||| |||| |||||||||||| |||| ||||||||||||| |||| |||||||    
T  16462802 tattagctaacttttcgctattagcgaagttgcacagtgacagcatgccctattttatgttcttgtgtctttttcaca 16462725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 25942298 - 25942126
Alignment:
Q  23 ggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctatta 122  Q
    ||||||| |||||||||| |||| |||||||||||||||| | |||||||||||||| ||||||||||| | ||||  | ||||||| |||| | |||||    
T  25942298 ggtttttttgggtgaaaaatgtgtagaaatcgtaacagcaggagaaaaactcgctagaagttcgctattggtgaaatcctctgtaacaatttcgatatta 25942199  T
Q  123 gctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||   |||||| ||||||||||||||| |||||||||||| | |||||| ||||| ||| |||| |||||||    
T  25942198 gctagattttcgacattagcgaaattgcacagtgacagcatactctgtttcatgtttttgtgtctttttcaca 25942126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 37 - 195
Target Start/End: Complemental strand, 37539254 - 37539097
Alignment:
Q  37 aaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagctcagttttcgcc 136  Q
    |||| |||| |||||||||||||||| ||||||| |||||||| ||||||||||| ||||||  | || |||| |||| |||| |||||   ||||||||    
T  37539254 aaaagtgtgtagaaatcgtaacagcatgggaaaa-ctcgctagaagttcgctattggcgaaatcctctataacaatttcgctaatagctagattttcgcc 37539156  T
Q  137 attagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||||||| |||||||||||| | |||||| ||||||||| |||| |||||||    
T  37539155 attagcgaaattgcacagtgacagcatactctgtttcatgttcttgggtctttttcaca 37539097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 47975124 - 47975225
Alignment:
Q  23 ggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctatta 122  Q
    ||||||| | |||||||| |||||| |||||||||||| | |||||||||||||||| ||||||||||| ||||||| | ||||||| |||| |||||||    
T  47975124 ggtttttttcggtgaaaaatgtgcaaaaatcgtaacagtaggggaaaaactcgctagaagttcgctattggcgaaaccctctgtaacaatttcgctatta 47975223  T
Q  123 gc 124  Q
    ||    
T  47975224 gc 47975225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 24270214 - 24270345
Alignment:
Q  64 gggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagctcag-ttttcgccattagcgaaattgcccagtgacagca 162  Q
    |||||||||||||||| ||||||||||| ||||||  | ||||||| |||| | || |||| ||| |||| ||| ||||| ||||||| |||||||| ||    
T  24270214 gggaaaaactcgctagaagttcgctattggcgaaatcctctgtaacaatttcggtaatagc-cagatttttgccgttagcaaaattgcacagtgacaaca 24270312  T
Q  163 ttccctgttttatgttcttgcgtctgtttcaca 195  Q
    | || ||||| |||||||||||||| |||||||    
T  24270313 taccttgtttcatgttcttgcgtctttttcaca 24270345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 11309863 - 11309806
Alignment:
Q  138 ttagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||||||| |||||||    
T  11309863 ttagcgaaattgcacagtgacagcattctctgtttcatgttcttgcgtctatttcaca 11309806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 47975220 - 47975278
Alignment:
Q  137 attagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||||||| |||||||| ||| || ||||||||||||||| |||| |||||||    
T  47975220 attagcgaaattgcacagtgacaacataccttgttttatgttcttgtgtctttttcaca 47975278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 15720478 - 15720438
Alignment:
Q  155 tgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  15720478 tgacagcatgccctgtttcatgttcttgcgtctttttcaca 15720438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 24738153 - 24738329
Alignment:
Q  19 atttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgct 118  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24738153 atttggtttttttgggtgaaaattgtgcataaatcgtaacagcaaggggaaaactcgctaggagttcgctattagcgaaactccctgtaactatttcgct 24738252  T
Q  119 attagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24738253 attagctcaattttcgccattagcgaatttgcccagtgacagcattccctgttttatgttcttgcgtctttttcaca 24738329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 24750922 - 24751098
Alignment:
Q  19 atttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgct 118  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24750922 atttggtttttttgggtgaaaattgtgcataaatcgtaacagcaaggggaaaactcgctaggagttcgctattagcgaaactccctgtaactatttcgct 24751021  T
Q  119 attagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24751022 attagctcaattttcgccattagcgaatttgcccagtgacagcattccctgttttatgttcttgcgtctttttcaca 24751098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 24668384 - 24668557
Alignment:
Q  19 atttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgct 118  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24668384 atttggtttttttgggtgaaaattgtgcataaatcgtaacagcaaggggaaaactcgctaggagttcgctattagcgaaactccctgtaactatttcgct 24668483  T
Q  119 attagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttc 192  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  24668484 attagctcaattttcgccattagcgaatttgcccagtgacagcattccctgttttatgttcttgcgtctttttc 24668557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 18419278 - 18419101
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  18419278 aatttggtttttttgggtgaaaaatgtgcagaaatcgtaacagcaagggaaaaactcgctaggatttcgctattagcgaaactccctgtaactatttcgc 18419179  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||| || ||||||| || | |||||||||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  18419178 tattagcccacttttcgctatcaacgaaattgcccagtgacagcataccctgttttatgttcttgcatctttttcaca 18419101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 24617174 - 24617286
Alignment:
Q  83 ttcgctattagcgaaactccctgtaactattttgctattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttg 182  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24617174 ttcgctattagcgaaactccctctaactatttcgctattagctcaatttttgccattagcgaaattgcccagtgacagcattccttgttttatgttcttg 24617273  T
Q  183 cgtctgtttcaca 195  Q
    ||||| |||||||    
T  24617274 cgtctttttcaca 24617286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 24746433 - 24746545
Alignment:
Q  83 ttcgctattagcgaaactccctgtaactattttgctattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttg 182  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24746433 ttcgctattagcgaaactccctctaactatttcgctattagctcaatttttgccattagcgaaattgcccagtgacagcattccttgttttatgttcttg 24746532  T
Q  183 cgtctgtttcaca 195  Q
    ||||| |||||||    
T  24746533 cgtctttttcaca 24746545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 36508970 - 36509147
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| |||||||||| |||| |||||||||||||| | ||||| |||||||||| ||||||||||| ||||| | | ||||||| |||| ||    
T  36508970 aatttgggttttttgggtgaaaaatgtgtagaaatcgtaacagtaggggaagaactcgctagaagttcgctattggcgaatccctctgtaacaatttcgc 36509069  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||| | ||||||| |||||| |||||||| ||||||| ||| |||||||| |||||||||||||| |||||||    
T  36509070 tattagctaacttttcgctattagcaaaattgcctagtgacaacataccctgtttcatgttcttgcgtctttttcaca 36509147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 24713405 - 24713517
Alignment:
Q  83 ttcgctattagcgaaactccctgtaactattttgctattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttg 182  Q
    |||||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  24713405 ttcgcttttagcgaaactccctgtaactatttcgctattagctcaatttttgccattagcgaaattgcccagtgacaacattccttgttttatgttcttg 24713504  T
Q  183 cgtctgtttcaca 195  Q
    ||||| |||||||    
T  24713505 cgtctttttcaca 24713517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 16604790 - 16604967
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| |||||||||| |||| ||||||||||| |||| |||||||||||| ||| ||||||||||| ||||||  | ||||||| || | ||    
T  16604790 aatttggattttttgggtgaaaaatgtgaagaaatcgtaatagcaggggaaaaactcgatagaagttcgctattggcgaaatcctctgtaacaatctcgc 16604889  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||    |||||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||| |||||||    
T  16604890 tattagcaagattttcgccattagcgaaattgcacagtggcagcataccctgtttcatgttcttgcgtctttttcaca 16604967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 24594289 - 24594359
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgct 88  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24594289 aatttggtttttttgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgct 24594359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 26762133 - 26762090
Alignment:
Q  152 cagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||||||  |||||||||||||||||||||| |||||||    
T  26762133 cagtgacagcatctcctgttttatgttcttgcgtctttttcaca 26762090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 17011455 - 17011415
Alignment:
Q  155 tgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  17011455 tgacagcatcccctgtttcatgttcttgcgtctttttcaca 17011415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 23194738 - 23194914
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||    
T  23194738 aatttggtttttttgggtaaaaattctgcagaaatcgtaacagcaagggaaaaactcgctagtagttcgctattagcgaaactcc-tgtaactatttcgc 23194836  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  23194837 tattagctcacttttcgccattagcgaaattgcccagtgacagcataccctgttttatgttcttgcgtctttttcaca 23194914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 45574238 - 45574415
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  45574238 aatttggtttttttgggtgaaaaatgtgcagaaatcgtaacagcaagggaaaaactcgctaggatttcgctattagcgaaactccctgtaactatttcgc 45574337  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  45574338 tattagctcacttttcgctatcagcgaaattgcccggtgacagcataccctgttttatgttcttgcgtctttttcaca 45574415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 22130251 - 22130428
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  22130251 aatttggtttttttgggtgaaaaatatgcagaaatcgtaacagcaagggaaaaactcgctaggatttcgctattagcgaaactccctgtaactatttcgc 22130350  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||| ||||||| || ||||||| |||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  22130351 tattagctcaattttcgctatcagcgaaactgcccagtgacagcataccctgttttatgttcttacgtctttttcaca 22130428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 7052246 - 7052418
Alignment:
Q  23 ggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctatta 122  Q
    ||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||| | | ||||||| |||| |||||||    
T  7052246 ggtttttttgggtgaaaaatgtgcagaaatcgtaacagtaggggaaaaactcgctagaagttcgctattggcgaatcactctgtaacaatttcgctatta 7052345  T
Q  123 gctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||| | |||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| |||||||    
T  7052346 gctaacttttcgccattagcgaaattgcacagtgacagcatacactgttttatgttcttgcgtctttttcaca 7052418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 24723687 - 24723758
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgcta 89  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||    
T  24723687 aatttgggttttttgggtgaaaaatgtgcagaaatcgtaacagcaggggaaaaactcgctagaagttcgcta 24723758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 8306426 - 8306349
Alignment:
Q  20 tttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaac 99  Q
    |||||||||| ||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||||||| |||||||    
T  8306426 tttggttttt-tgggtgaaaat-gtgcagaaatcgtaacagtaggggaaaaacttgctaggagttcgctattggcgaaac 8306349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 10812867 - 10812921
Alignment:
Q  138 ttagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttc 192  Q
    |||||||||||||  |||| |||||||| |||||| ||||||| |||||||||||    
T  10812867 ttagcgaaattgcatagtggcagcattctctgtttcatgttctcgcgtctgtttc 10812921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 44892178 - 44892136
Alignment:
Q  153 agtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||||| ||||||| |||||||||||||| |||||||    
T  44892178 agtgacagcatttcctgtttcatgttcttgcgtctttttcaca 44892136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 25483660 - 25483837
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  25483660 aatttgttttttttgggtgaaaaatgtgcagaaatggtaacagcaagggaaaaactcgctaggatttcgctattagcgaaactccctttaactattttgc 25483759  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||| ||||||| || |||||||||||| ||||||||||| |||| |||||||||||||||||| |||||||    
T  25483760 tattagctcacttttcgctatcagcgaaattgcctagtgacagcataccctattttatgttcttgcgtctttttcaca 25483837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 36732711 - 36732887
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||| ||||    | ||||||| |||| ||    
T  36732711 aatttgggttttttgggtgaaaaatgtgcagaaatcgtaacagcatgg-aaaaactcgctagaagttcgctattggcgatttcctctgtaacaatttcgc 36732809  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||| | |||||||||||||||||||||| |||||||||||| || |||||||||||||||||||| |||||||    
T  36732810 tattagctaaattttcgccattagcgaaattgcacagtgacagcataccttgttttatgttcttgcgtctttttcaca 36732887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 22483606 - 22483435
Alignment:
Q  23 ggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctatta 122  Q
    ||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||  |  |||||| |||| |||||||    
T  22483606 ggtttttttgggtgataaatgtgcagaaatcgtaacagcaagggaaaa-ctcgctagaagttcgctattggcaaaatcctatgtaacaatttcgctatta 22483508  T
Q  123 gctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||   ||||||||||||| |||||||| |||||||| ||| |||||||| |||||| ||||||| |||||||    
T  22483507 gctagattttcgccattagtgaaattgcacagtgacaacataccctgtttcatgttcatgcgtctttttcaca 22483435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 22207999 - 22207956
Alignment:
Q  152 cagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||||||  |||||||||||||||||||||| |||||||    
T  22207999 cagtgacagcatctcctgttttatgttcttgcgtctttttcaca 22207956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 21399439 - 21399399
Alignment:
Q  155 tgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  21399439 tgacagcatgccctgtttcatgttcttgcgtctttttcaca 21399399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 21793932 - 21793892
Alignment:
Q  155 tgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  21793932 tgacagcatgccctgtttcatgttcttgcgtctttttcaca 21793892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 7997 - 7822
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | || |||| |||||||    
T  7997 aatttggtttttttgggtgaaaat-gtgcagaaatcgtaacagcaagggaaaaactcgctaggagatcgctattggcgaaacactct-taacaattttgc 7900  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||| ||| | |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||    
T  7899 tattcgctaacttttcgccattagcaaaattgctcagtgacagcataccctgttttatgttcttgcgtctttttcaca 7822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 9921 - 9744
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| |||||||||| ||||||||| |||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  9921 aatttgggttttttgggtgaaaaatgtgcagaagtcgtagtagcaagggaaaaactcgctaggatttcgctattagcgaaactccctgtaactatttcgc 9822  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||||| ||||||| || ||||||||| | ||||||||||||  |||||||||||||||||||||  |||||||    
T  9821 tattagctcaattttcgctatcagcgaaatttctcagtgacagcataacctgttttatgttcttgcgtcattttcaca 9744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 8916 - 8754
Alignment:
Q  25 tttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagc 124  Q
    ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||    
T  8916 tttttttggatgaaaaatgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaaccctctgtaacaatttcgctattagc 8817  T
Q  125 tcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtct 187  Q
    | |||||||||||||||||||||| |   |||||| ||| |||||||| ||||||||||||||    
T  8816 taagttttcgccattagcgaaattacatggtgacaacataccctgtttcatgttcttgcgtct 8754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 174334 - 174499
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    |||||||||||| | |||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| || |||||| |||| ||    
T  174334 aatttggtttttttaggtgaaaaatgtgtagaaatcgtaacaacaacggaaaaactcgctaggagttcgctattggcgaaaccccttgtaacaatttcgc 174433  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgc 183  Q
    |||||||| | |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||    
T  174434 tattagctaacttttcgcctttagcgaaattgctcagtgacagcataccctgttttatgttcttgc 174499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 1951 - 1774
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| ||| |||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||| | | ||||||| |||| ||    
T  1951 aatttgggttttttggatgaaaaatgtgcagaaatcgtaacagtaggggaaaaactcgctagaagttcgctattggcgaatccctctgtaacaatttcgc 1852  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||| ||| | ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||| |||||||    
T  1851 tattcgctaacttttcgctattagcgaaattgctcagtgacagcataccctgttttatgttcttgcatctttttcaca 1774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 9017 - 9194
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| |||||||||| | |||| |||||||||| ||| |||||||||||||||| ||||||||||| ||||||  | ||||||| |||| ||    
T  9017 aatttgggttttttgggtgaaaaatatgcataaatcgtaactgcaggggaaaaactcgctagaagttcgctattggcgaaatcctctgtaacaatttcgc 9116  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||| | ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||  ||| |||||||    
T  9117 tattagctaacttttcaccattagcgaaattgcacagtgacagcataccctgttttatgttcttgtatctttttcaca 9194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 21947 - 21770
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgc 117  Q
    ||||||| |||| |||||||||| |||||||||||||||||||   |||||||||||||||| ||||||||||| ||||||| |  |||||| |||| ||    
T  21947 aatttgggttttttgggtgaaaaatgtgcagaaatcgtaacagtgggggaaaaactcgctagaagttcgctattggcgaaaccctttgtaacaatttcgc 21848  T
Q  118 tattagctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    |||||||| |  |||||| |||||||||||||  |||||||||||| |||| |||||||||||||||||| |||||||    
T  21847 tattagctaaagtttcgctattagcgaaattgtacagtgacagcataccctattttatgttcttgcgtctttttcaca 21770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 19234942 - 19234774
Alignment:
Q  26 ttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagct 125  Q
    |||| |||||||||| |||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||  | ||||||| |||| || | ||||     
T  19234942 ttttttgggtgaaaaatgtgcagaaatcgtaacaacaggggaaaaactcgctagaagttcgctattggcgaaatcctctgtaacaatttcgcaaatagc- 19234844  T
Q  126 cagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||  ||||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||| |||||||    
T  19234843 catatttcgccattagcgaaattgcacagtgacaacataccctgtttcatgttcttgcgtctttttcaca 19234774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 47 - 195
Target Start/End: Complemental strand, 35057340 - 35057193
Alignment:
Q  47 agaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagctcag-ttttcgccattagcgaa 145  Q
    |||||| ||||||||| ||||||| |||||||| ||||||||||| ||||||  | ||||||| ||||  ||| |||| ||| |||||||||||||| ||    
T  35057340 agaaattgtaacagcaggggaaaa-ctcgctagaagttcgctattggcgaaatcctctgtaacaatttcactaatagc-cagattttcgccattagcaaa 35057243  T
Q  146 attgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||| |||||||||||| |||||||| |||||||||||||| |||||||    
T  35057242 attgcacagtgacagcataccctgtttcatgttcttgcgtctttttcaca 35057193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 195
Target Start/End: Complemental strand, 13285554 - 13285397
Alignment:
Q  37 aaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagctcag-ttttcgc 135  Q
    |||| |||| |||||||||||||| |  |||||| |||||||| |||| |||||| ||||||  | ||||||| |||| || | |||  ||| |||||||    
T  13285554 aaaagtgtgtagaaatcgtaacagtagcggaaaa-ctcgctagaagtttgctattggcgaaatcctctgtaacaatttcgcgaataga-cagattttcgc 13285457  T
Q  136 cattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||||||||||||||| || ||||| ||| || ||||| ||||||||||||||||||||||    
T  13285456 cattagcgaaattgcacaatgacatcataccatgtttcatgttcttgcgtctgtttcaca 13285397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 106394 - 106566
Alignment:
Q  23 ggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctatta 122  Q
    ||||||| | |||||||| ||| ||||||||||||||| | |||||||||||||||  ||||||||||| ||||| | | ||||||| |||| ||||||     
T  106394 ggtttttttaggtgaaaaatgttcagaaatcgtaacagtaggggaaaaactcgctattagttcgctattggcgaatccctctgtaacaatttcgctattg 106493  T
Q  123 gctcagttttcgccattagcgaaattgcccagtgacagcattccctgttttatgttcttgcgtctgtttcaca 195  Q
    ||| | ||||||| |||||||||||||| |||||||| |||  |||||||||||||||||||||| |||||||    
T  106494 gctaacttttcgctattagcgaaattgcacagtgacaacataacctgttttatgttcttgcgtctttttcaca 106566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 21365 - 21275
Alignment:
Q  18 aatttggtttttctgggtgaaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaa 108  Q
    |||||||||||| |||||||||| ||||||||||||||||||  | |||||||||||||||| ||||||||||| || |||| | ||||||    
T  21365 aatttggtttttttgggtgaaaaatgtgcagaaatcgtaacaataggggaaaaactcgctagaagttcgctattggcaaaaccctctgtaa 21275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 35724 - 35845
Alignment:
Q  37 aaaattgtgcagaaatcgtaacagcaagggaaaaactcgctaggagttcgctattagcgaaactccctgtaactattttgctattagctcag-ttttcgc 135  Q
    |||| |||| |||||||||||||||| | ||||| |||||||| ||||| ||||| ||||||  | ||||||| |||| |||||||| |||| |||||||    
T  35724 aaaaatgtgtagaaatcgtaacagcaggagaaaa-ctcgctagaagttctctattggcgaaatcctctgtaacaatttcgctattag-tcagattttcgc 35821  T
Q  136 cattagcgaaattgcccagtgaca 159  Q
    |||||||||||||||  |||||||    
T  35822 cattagcgaaattgcatagtgaca 35845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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