View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8918_low_55 (Length: 207)

Name: NF8918_low_55
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8918_low_55
NF8918_low_55
[»] chr4 (10 HSPs)
chr4 (1-207)||(8646743-8646932)
chr4 (1-196)||(8611729-8611907)
chr4 (94-194)||(8555689-8555789)
chr4 (94-194)||(8556933-8557033)
chr4 (1-68)||(8594517-8594584)
chr4 (119-196)||(8567241-8567318)
chr4 (1-66)||(8567123-8567187)
chr4 (4-67)||(8557056-8557119)
chr4 (106-169)||(8588926-8588989)
chr4 (1-59)||(8555610-8555668)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8646743 - 8646932
Alignment:
Q  1 atgattttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaaatagaatgtacctattcaatgttatgagtcgaaaaatgtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||                 |||    
T  8646743 atgattttcttgggtaataagtgagacgtgagggaaagtatgagaaaaacggttcaaaaatagaatgtatctattcaatg-----------------tta 8646825  T
Q  101 tgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatgatagctccaatccacaataggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8646826 tgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatgatagctccaatccacaataggt 8646925  T

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Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 8611907 - 8611729
Alignment:
Q  1 atgattttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaaatagaatgtacctattcaatgttatgagtcgaaaaatgtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||                 
T  8611907 atgattttcttgggtaataagtgagacgtgagggaaagtatgagaaaaacggttcaaaaatagaatgtaactattcaatgttatgag------------- 8611821  T
Q  101 tgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatgatagctccaatccacaat 196  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  8611820 ----tcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgctaatcaaaggtttactatgatagctccaatccacaat 8611729  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 8555689 - 8555789
Alignment:
Q  94 aatgttatgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatgatagctccaatccac 193  Q
    ||||| ||||||||||||  |||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  8555689 aatgtcatgagtcatgtgcctattcaaattcaaatgaaggacaaatgagatgagaatgagttttgctaatcaaagggttattgtgatagctccaatccac 8555788  T
Q  194 a 194  Q
    |    
T  8555789 a 8555789  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 8557033 - 8556933
Alignment:
Q  94 aatgttatgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatgatagctccaatccac 193  Q
    ||||| ||||||||||||  ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  8557033 aatgtcatgagtcatgtgcctattcaaattcaaaagaaggataaatgagatgagaatgagttttgctaatcaaagatttattgtgatagctccaatccac 8556934  T
Q  194 a 194  Q
    |    
T  8556933 a 8556933  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 8594517 - 8594584
Alignment:
Q  1 atgattttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaaatagaatgt 68  Q
    ||||||||||||||| | || |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  8594517 atgattttcttgggtgagaaatgagacgtaagggaaagtatgagaaaaacggttcaaaaatagaatgt 8594584  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 8567241 - 8567318
Alignment:
Q  119 aaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatgatagctccaatccacaat 196  Q
    ||||| || ||||||||||||||||||||||||||||||  |||||||||| ||||| |||||||| || ||||||||    
T  8567241 aaattaaaaagaaggacaaatgagatgagaatgagttttcctaatcaaagggttattgtgatagcttcagtccacaat 8567318  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8567123 - 8567187
Alignment:
Q  1 atgattttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaaatagaat 66  Q
    ||||||||||| |||||||  ||||  |||||||||||||||||||||||||||||||||||||||    
T  8567123 atgattttctttggtaatatatgagt-gtgagggaaagtataagaaaaacggttcaaaaatagaat 8567187  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 8557119 - 8557056
Alignment:
Q  4 attttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaaatagaatg 67  Q
    |||||||||||| | || |||||||| |||| |||||| |||||||||||||||||||||||||    
T  8557119 attttcttgggtgagaaatgagacgtaaggggaagtatgagaaaaacggttcaaaaatagaatg 8557056  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 8588926 - 8588989
Alignment:
Q  106 catgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaagg 169  Q
    |||||| | |||||||||||| ||||| ||| |||||||||| |||||||||| |||| |||||    
T  8588926 catgtgctaattcaaattcaaaagaagaacatatgagatgaggatgagttttggtaataaaagg 8588989  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8555610 - 8555668
Alignment:
Q  1 atgattttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaa 59  Q
    ||||| ||||||||| | || |||||||| |||| |||||| |||||||||||||||||    
T  8555610 atgatattcttgggtgagaaatgagacgtaaggggaagtatgagaaaaacggttcaaaa 8555668  T

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