View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_low_8 (Length: 531)
Name: NF8918_low_8
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 44690039 - 44690480
Alignment:
| Q |
18 |
acacgccagatacatggttagaaacactaatgttcaattttaaattaggattcatgccattccacttgaatattggaggggcttaaaagaaaattcctat |
117 |
Q |
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| T |
44690039 |
acacgccagatacatggttagaaacactaatgttcaattttaaattaggattcatggcattccacttgaatattggaggggcttaaaagaaaattcctat |
44690138 |
T |
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| Q |
118 |
tggaaggagtatcagaattcttctggtattagatgaagcgagaagcgattagtagcgaagatgatgtttcgatttatctttattaattgaatttcagaat |
217 |
Q |
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| T |
44690139 |
tggaaggagtatcagaattcttctggtattagatgaagcgagaagcgattagtagcgaagatgatgtttcgatttatctttcttaattgaatttcagaat |
44690238 |
T |
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| Q |
218 |
ttttctcaaaaatttagacgaacattcactttaaagaagaccttcaagtttaaagaacgctttcaaaatatttatatttatatctcttcaaaaatcaaac |
317 |
Q |
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| T |
44690239 |
ttttttcaaaaatttagacgaacattcactttaaagaagacctttaaatttaaagaacattttcaaaatatttatatttatatctcttcaaaaatcaagc |
44690338 |
T |
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| Q |
318 |
ctagttttgaccaagacttttgagtctaagaactattttttaccagaaggacaaaatcatgtcatttgttttttgattgtgatgtttcttataagttatg |
417 |
Q |
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| T |
44690339 |
atagttttgaccaagacttttgagtctaagaactattttttaccataaggacaaaatcatgtcatttgttttttgattgtgatgtttcttataagttatg |
44690438 |
T |
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| Q |
418 |
tttggatattttatctttgctatgtgttagccgtgctttgtc |
459 |
Q |
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| T |
44690439 |
tttggatattttatctttgctatgtgttagccgtgctttgtc |
44690480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 483 - 531
Target Start/End: Original strand, 44690480 - 44690528
Alignment:
| Q |
483 |
ctcaatttgtatgtttgatttccgataagaaatttgtgaatgactatct |
531 |
Q |
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| T |
44690480 |
ctcaatttgtatgtttgatttccgataagaaatttgtgaatgactatct |
44690528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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