View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_high_3 (Length: 606)
Name: NF8919_high_3
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Original strand, 37553755 - 37554335
Alignment:
| Q |
18 |
cttttgggtgtctatagttatccccatatcctcccactatccttgacacgaacatgcaaaggtttgccggacaacttgatcgttgcgatccctcaccact |
117 |
Q |
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| T |
37553755 |
cttttgggtgtccatagttagccccatatcctcccactatccttgacacgaacatgcaaaggtttgccggataacttgatcattgcgatccctcaccact |
37553854 |
T |
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| Q |
118 |
tagctcttatgaactacaaacccatacattttaacaaaccaagagtaaaacatgcaggcaacatctaacccactagtacacgtttcagtggagatcgatt |
217 |
Q |
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| T |
37553855 |
tagctcttatgaactacaaacccatacattttaacaaaccaagagtaaaacatgcaggcaacatctaacccactagtacacgttccagtggagatcgatt |
37553954 |
T |
|
| Q |
218 |
aaaacttactatgaaattaaggcaaaggatacatgagtgaattttccagatattggttcattgaatgatggcagagaatcacttcaaggaacggttatgc |
317 |
Q |
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| T |
37553955 |
aaaacttactatgaaattaaggcaaaggatacatgagtgaattttccaaatattggttccttgaatgatggcagagaatcacttcaaggaacggttatgc |
37554054 |
T |
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| Q |
318 |
ttaatttcccttaaaaggctagatatattaaaaggtgatgggttttggaagtaatgtaaaggtgtattgatcggacctcccggtacggggaaaatgatgt |
417 |
Q |
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| T |
37554055 |
ttaatttcccttaaaaggttagatctattaaaaggtgatggattttggaagtcatgtaaaggtgtattgatcggacctcccggtacggggaaaatgatgt |
37554154 |
T |
|
| Q |
418 |
ctgcaaaggcagtttgcaaacgaagatgggacaagcttcatcaatgtatcttcgtccatcattagtggaatgttgttcggacaaagtgaaaagaacgttc |
517 |
Q |
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| T |
37554155 |
ctgcaaaggcagtttgcaaacgaagatgggacaagcttcatcaatgtatcttcgtccatcattagtggaatgttgttcgaacaaagtgaaaagaacgttc |
37554254 |
T |
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| Q |
518 |
gagctctatttttattagcgacaaagttggccccaacaattatttttattgttgaagttgataaataatatgggaacacca |
598 |
Q |
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| T |
37554255 |
gagctctgtttttattagcgacaaagttggccccaacaattatttttattgttgaagttgataaataatatacgaacacca |
37554335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 26131745 - 26131916
Alignment:
| Q |
18 |
cttttgggtgtctatagttatccccatatcctcccactatccttgacacgaacatgcaaaggtttgccggacaacttgatcgttgcgatccctcaccact |
117 |
Q |
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|||| |||| || ||||||| ||| ||||||||| ||||||||||| ||||| ||||||||||| | | || || | | ||||||||||| || ||| |
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| T |
26131745 |
ctttcgggtttccatagttagtcccctatcctccctgtatccttgacatgaacaaacaaaggtttgctgaagaatttcacctttgcgatccctaacaact |
26131844 |
T |
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| Q |
118 |
tagctcttatgaactacaaacccatacattttaacaaaccaagagtaaaacatgcaggcaacatctaaccca |
189 |
Q |
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| T |
26131845 |
tgccccttacgaactgaaaatccagacattctagcaaatcaagagtaaaacatgtaggcaacctccaaccca |
26131916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 386
Target Start/End: Original strand, 44934962 - 44935090
Alignment:
| Q |
254 |
gtgaattttccagatattggttcattgaatgatggcagagaatcacttcaaggaacggttatgcttaatttcccttaaaaggctagatatattaaaaggt |
353 |
Q |
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|||| |||| ||||||||||| | ||| |||||| | |||||||||||||| | ||||||||||| |||||| ||| | |||| |||| |||||| |
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| T |
44934962 |
gtgactttttcagatattggtgctttggatgatgttaaagaatcacttcaagaagcggttatgcttc----cccttagaagaccagatctattcaaaggt |
44935057 |
T |
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| Q |
354 |
gatgggttttggaagtaatgtaaaggtgtattg |
386 |
Q |
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| T |
44935058 |
gatggggttctgaagccatgtaaaggtgtattg |
44935090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 11009632 - 11009599
Alignment:
| Q |
152 |
caaaccaagagtaaaacatgcaggcaacatctaa |
185 |
Q |
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| T |
11009632 |
caaaccaagagtaaaacatgtaggcaacatctaa |
11009599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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