View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_high_5 (Length: 599)
Name: NF8919_high_5
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 9630065 - 9629480
Alignment:
| Q |
1 |
tttcttgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9630065 |
tttcttgaaacatcaagctcataaacttgagtcaaattagctatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagtt |
9629966 |
T |
|
| Q |
101 |
tcgaaagaacgccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaacaaggttaggaaaaaccgacaaatttaagtgatt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9629965 |
tcgaaagaacaccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaacaaggttaggaaaaaccgacaaatttaagtgatt |
9629866 |
T |
|
| Q |
201 |
aagagtaccttcaagtccagtatatgccaagtttatggttgtaacacttcctttagaatcatcacaagtgatacctctccatgaacatggtgtttgtgtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9629865 |
aagagtaccttcaagtccagtatatgccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccataaacatggtgtttgtgtt |
9629766 |
T |
|
| Q |
301 |
gaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagtcctgaagtga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9629765 |
gaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagtcctgaagtga |
9629666 |
T |
|
| Q |
401 |
tttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtgatgatcacaaaattc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9629665 |
tttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtgatgatcacaaaattc |
9629566 |
T |
|
| Q |
501 |
tgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatctatgattataatatagccatagccaacttgatgt |
586 |
Q |
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| T |
9629565 |
tgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatttatgattataatatagccatagccaacttgatgt |
9629480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 13607181 - 13607766
Alignment:
| Q |
1 |
tttcttgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagtt |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13607181 |
tttcatgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagtt |
13607280 |
T |
|
| Q |
101 |
tcgaaagaacgccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaacaaggttaggaaaaaccgacaaatttaagtgatt |
200 |
Q |
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| T |
13607281 |
tcgaaagaacaccgatgttttcaggtataacaccggtgagattgtttgatttaagatcaagacgaaaaaggttaggaaaaacagacaaatttaagtgatt |
13607380 |
T |
|
| Q |
201 |
aagagtaccttcaagtccagtatatgccaagtttatggttgtaacacttcctttagaatcatcacaagtgatacctctccatgaacatggtgtttgtgtt |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13607381 |
aagagtaccttcaagtccagtaaatgccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccataaacatggtgtttgtgtt |
13607480 |
T |
|
| Q |
301 |
gaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagtcctgaagtga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13607481 |
gaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagtcctgaagtga |
13607580 |
T |
|
| Q |
401 |
tttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtgatgatcacaaaattc |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13607581 |
tttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtgatgatcacaaaattc |
13607680 |
T |
|
| Q |
501 |
tgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatctatgattataatatagccatagccaacttgatgt |
586 |
Q |
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| T |
13607681 |
tgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatttatgattataatatagccatagccaacttgatgt |
13607766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 13902824 - 13902279
Alignment:
| Q |
1 |
tttcttgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagtt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13902824 |
tttcgtgaaacatcaagctcataaacttgagtcatattagcaatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattggagtt |
13902725 |
T |
|
| Q |
101 |
tcgaaagaacgccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaacaaggttaggaaaaaccgacaaatttaagtgatt |
200 |
Q |
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| |||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||||| |||||||| ||||| ||||||||||| |
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| T |
13902724 |
ttgaaagaacaccgatgttttcaggtatgacaccggtgagattgtttgctttgagatcaagacgaagaaggtttggaaaaactgacaagtttaagtgatt |
13902625 |
T |
|
| Q |
201 |
aagagtaccttcaagtccagtatatgccaagtttatggttgtaacacttcctttagaatcatcacaagtgatacctctccatgaacatggtgtttgtgtt |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13902624 |
aagagtaccttcaagtccagtaaatgccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccataaacatggtgtttgtgtt |
13902525 |
T |
|
| Q |
301 |
gaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagtcctgaagtga |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13902524 |
gaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagccctgaagtga |
13902425 |
T |
|
| Q |
401 |
tttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgca------tatggttaaggttggacattgtgtgatgatcaca |
494 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| || |||| ||| |
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| T |
13902424 |
tttggcatagagctagcaacaaagaaaccaatacagtagcttgaattggaaatgtatgcatatgattatggttaaggttggacattgtttggtgattaca |
13902325 |
T |
|
| Q |
495 |
aaattctgaaaatggtttctttaattgttttatttgttcaatgaag |
540 |
Q |
| |
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||| || ||||||| ||||| ||||| ||||||| |||||||||| |
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|
| T |
13902324 |
aaactcagaaaatgacttcttcaattgctttatttattcaatgaag |
13902279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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