View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_10 (Length: 601)
Name: NF8919_low_10
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 16 - 594
Target Start/End: Complemental strand, 4671593 - 4671016
Alignment:
| Q |
16 |
cagctactggtaaaggaccacttaacaactgggctactcatttgagtgatcctcttcacactaccatcattgataccttttcttcctcttagttctcgat |
115 |
Q |
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| T |
4671593 |
cagctactggtaaaggaccacttaacaactgggctactcatttgagtgatcctcttcacactaccatcattgataccttttcttcctcttagttcttgat |
4671494 |
T |
|
| Q |
116 |
taactcatgtatggttcaacctctatatatataaatgctttttggcattggtttgtaaacattgtggttagtttaattagtacttgtaaaattcctaatg |
215 |
Q |
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| T |
4671493 |
taactcatgtatggttcaacctctatatatataaatgctttttggcattggtttgtaaacattgtggttagtttaattagtacttgtaaaattcctaatg |
4671394 |
T |
|
| Q |
216 |
tgaattggagcagttaaggttaaatattttttctgctggatgggacgtgttctactataaatgttaactaagcatgaaacttaagggcaatgaggaacat |
315 |
Q |
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| T |
4671393 |
tgaattggagcagttaaggttaaatattttttctgctggatgggaagtgttctactataaatgttaactaagcatgaaa-ttaagggcaatgaggaacat |
4671295 |
T |
|
| Q |
316 |
tatgaacattgtggagtcatgttgataacttgttacccaaacaaaatgggccttaaacattaggtcgaagtgttagggttatgagagaagttttttgtga |
415 |
Q |
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| T |
4671294 |
tatgaacattgtggagtcatgttgataacttgttacccaaacaaaatgggccttaaacattaggtcgaagtgttagggttatgagagaagttttttgtga |
4671195 |
T |
|
| Q |
416 |
aaaaattatcattttagcataacaatctcaatgagtagtttttgattaaattattaatgacaagtctcataagttaaacacctgaaaagaattttagtaa |
515 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
4671194 |
aaaaattatcattttagcatgacaatctcaatgagtagtttttgattaaattattaatgacaagtctcataagttaaacacctgaaaggaattctagtaa |
4671095 |
T |
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| Q |
516 |
cacttttggagcatgcattaactttgatcatcaagctcacaataaaccagcatctctacaatgtccatgtgaacacgaa |
594 |
Q |
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| T |
4671094 |
cacttttggagcatgcattaactttgatcatcaagctcacaataaatcagcatctctacaatgtcaatgtgaacacgaa |
4671016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 4670666 - 4670608
Alignment:
| Q |
243 |
tttttctgctggatgggacgtgttctactataaatgttaactaagcatgaaacttaagggca |
304 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||| || |||||| |
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| T |
4670666 |
tttttctgctggatgggaagtgttcta---taaatgttaactaagcatgaaatttgagggca |
4670608 |
T |
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