View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8919_low_14 (Length: 571)

Name: NF8919_low_14
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8919_low_14
NF8919_low_14
[»] chr8 (6 HSPs)
chr8 (19-564)||(32519386-32519931)
chr8 (369-505)||(1158050-1158186)
chr8 (369-478)||(42066659-42066768)
chr8 (20-77)||(32530535-32530592)
chr8 (256-301)||(44762073-44762117)
chr8 (256-301)||(44765380-44765424)
[»] chr3 (6 HSPs)
chr3 (366-524)||(16441603-16441761)
chr3 (355-498)||(30911738-30911881)
chr3 (254-358)||(16441794-16441898)
chr3 (256-358)||(30911613-30911715)
chr3 (256-301)||(36326596-36326640)
chr3 (264-301)||(14029433-14029469)
[»] chr1 (6 HSPs)
chr1 (366-524)||(44085658-44085816)
chr1 (365-529)||(43147163-43147323)
chr1 (254-358)||(44085522-44085625)
chr1 (263-358)||(43147036-43147130)
chr1 (256-301)||(23405475-23405519)
chr1 (360-429)||(26247212-26247281)
[»] chr4 (8 HSPs)
chr4 (355-528)||(10129757-10129930)
chr4 (256-358)||(10129632-10129734)
chr4 (369-424)||(15831658-15831713)
chr4 (256-301)||(27387726-27387770)
chr4 (256-300)||(55322334-55322377)
chr4 (365-412)||(33256456-33256503)
chr4 (256-289)||(36050780-36050813)
chr4 (256-289)||(36054039-36054072)
[»] chr6 (7 HSPs)
chr6 (355-529)||(16389342-16389512)
chr6 (256-358)||(16389217-16389319)
chr6 (355-455)||(33623997-33624099)
chr6 (255-301)||(4834825-4834870)
chr6 (256-289)||(7426703-7426736)
chr6 (256-301)||(13886647-13886691)
chr6 (256-288)||(7422765-7422797)
[»] chr5 (4 HSPs)
chr5 (373-529)||(23408027-23408183)
chr5 (450-527)||(8715783-8715860)
chr5 (255-301)||(41709606-41709651)
chr5 (256-289)||(24108815-24108848)
[»] chr2 (2 HSPs)
chr2 (373-529)||(42202760-42202916)
chr2 (325-358)||(42202957-42202990)
[»] chr7 (5 HSPs)
chr7 (256-349)||(23841769-23841861)
chr7 (256-302)||(2534511-2534557)
chr7 (256-301)||(30452803-30452847)
chr7 (256-301)||(30456412-30456456)
chr7 (256-289)||(42513062-42513095)


Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 19 - 564
Target Start/End: Original strand, 32519386 - 32519931
Alignment:
Q  19 ttattgtacttcctttggtcttggaattgacaacagttatacggagcttctcgtatactgtgatgtgagcagcaaagacctgcaaaacattacaaagtca 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32519386 ttattgtacttcctttggtcttggaattgacaacagttctacggagcttctcgtatactgtgatgtgagcagcaaagacctgcaaaacattacaaagtca 32519485  T
Q  119 agcaagctctctatggacaacaagtagacaataaacttcattatttaatcgattcttaatatagcccgtggttttaaattgcattctgcatccacaattg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32519486 agcaagctctctatggacaacaagtagacaataaacttcattatttaatcgattcttaatatagcccgtggttttaaattgcattctgcatccacaattg 32519585  T
Q  219 tgtcccgcaatattgctgatgtggtagccaccgcaattgataggacccaattcgagtagggatcacactcctagaatttagagataaagaagagaattga 318  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32519586 tgtcccgcaatattgctgatgtggtagccaccgcaactgataggacccaattcgagtagggatcacactcctagaatttagagataaagaagagaattga 32519685  T
Q  319 ctgaatttcattgatgattgtaatagagaaaatacaagatgcttcgtaacaaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatgg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32519686 ctgaatttcattgatgattgtaatagagaaaatacaagatgcttcgtaacaaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatgg 32519785  T
Q  419 caacatagtcattcaacttcttaagtgtagtatgatccttttgagcctccctaattcattggactcaatctccaatctcacttcattgcagcccatatcc 518  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32519786 caacatagtcattcaactttttaagtgtagtatgatccttttgagcctccctaattcattggactcaatctccaatctcacttcattgcagcccatatcc 32519885  T
Q  519 ttgctcgtatcggcaactgcatcgcaccacaattgcagtataatct 564  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||    
T  32519886 ttgctcgtatcggcaactgcatcgcaccacaatttcagtgtaatct 32519931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 369 - 505
Target Start/End: Complemental strand, 1158186 - 1158050
Alignment:
Q  369 aaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaacttcttaagtgtagtatgatccttttgagcctcc 468  Q
    |||||||||||||| |||||||||| ||| |||||||||  |||||||||||||| | | |||| ||||| |||||||||||||||| ||||   |||||    
T  1158186 aaactagtgagtcatcaatcttctaaaactaatgagtcaccactaaatggcaacaaatttattccacttcctaagtgtagtatgatcattttagacctcc 1158087  T
Q  469 ctaattcattggactcaatctccaatctcacttcatt 505  Q
    |||||| |||||||||||| || ||||||| ||||||    
T  1158086 ctaatttattggactcaatttctaatctcatttcatt 1158050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 369 - 478
Target Start/End: Complemental strand, 42066768 - 42066659
Alignment:
Q  369 aaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaacttcttaagtgtagtatgatccttttgagcctcc 468  Q
    |||||||||| ||| |||| ||||||||| | ||||||| ||| ||||| |||||||||||||| |||||||| || ||||||||| ||||||||||||     
T  42066768 aaactagtgactcatcaatattctagaactattgagtcactacaaaatgacaacatagtcattccacttcttaggtttagtatgatacttttgagcctct 42066669  T
Q  469 ctaattcatt 478  Q
    ||||||||||    
T  42066668 ctaattcatt 42066659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 32530535 - 32530592
Alignment:
Q  20 tattgtacttcctttggtcttggaattgacaacagttatacggagcttctcgtatact 77  Q
    |||| ||||||||||||||||  |||||||||||||| |||| |||| ||||||||||    
T  32530535 tattttacttcctttggtcttcaaattgacaacagttttacgaagctgctcgtatact 32530592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 44762117 - 44762073
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcctagaatttagag 301  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||    
T  44762117 tgatacgacccaattcgagtagggatcacactcc-agaatttagag 44762073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 44765424 - 44765380
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcctagaatttagag 301  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||||    
T  44765424 tgatacgacccaattcgagtagggattacactcc-agaatttagag 44765380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 6e-63; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 366 - 524
Target Start/End: Complemental strand, 16441761 - 16441603
Alignment:
Q  366 aacaaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaacttcttaagtgtagtatgatccttttgagcc 465  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||    
T  16441761 aacaaactagtgagtcaccaattttctagaaccaatgagtcactactaaatggcaacatagtcattccacttgttaggtgtagtatgatccttttgggcc 16441662  T
Q  466 tccctaattcattggactcaatctccaatctcacttcattgcagcccatatccttgctc 524  Q
    |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  16441661 tccctaattcattggactcaatcttcaatctcactttattgcggcccatatccttgctc 16441603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 355 - 498
Target Start/End: Original strand, 30911738 - 30911881
Alignment:
Q  355 agatgcttcgtaacaaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaacttcttaagtgtagtatgat 454  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| ||| |||||||| |||    
T  30911738 agatccttcctaacaaactagtgagtcaccaatcttctagaactaatgagtcactactaaatggcaacatagtcattccacttgttaggtgtagtaagat 30911837  T
Q  455 ccttttgagcctccctaattcattggactcaatctccaatctca 498  Q
    |||||||  |||| |||||||||||| |||||||| ||||||||    
T  30911838 ccttttggccctcactaattcattggcctcaatcttcaatctca 30911881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 254 - 358
Target Start/End: Complemental strand, 16441898 - 16441794
Alignment:
Q  254 attgataggacccaattcgagtagggatcacactcctagaatttagagataaagaagagaattgactgaatttcattgatgattgtaatag-agaaaata 352  Q
    ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  16441898 attgatacgatccaatttgagtagggatcacactcctagaatttagagataaagaagagaattgact-aatttcattgataattgtaatagaagaaaata 16441800  T
Q  353 caagat 358  Q
    ||||||    
T  16441799 caagat 16441794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 256 - 358
Target Start/End: Original strand, 30911613 - 30911715
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcct-agaatttagagataaagaagagaattgactgaatttcattgatgattgtaatagagaaaataca 354  Q
    ||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||| |||| | ||||||||||||||||||||||||| |||||||    
T  30911613 tgatacgacccaattcgagtagggatcacacttcttaaaatttagagataaagaagagatttgatt-aatttcattgatgattgtaatagaggaaataca 30911711  T
Q  355 agat 358  Q
    ||||    
T  30911712 agat 30911715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 36326640 - 36326596
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcctagaatttagag 301  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactcc-agaatttagag 36326596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 14029469 - 14029433
Alignment:
Q  264 cccaattcgagtagggatcacactcctagaatttagag 301  Q
    |||||||||||||||||||||||||| |||||||||||    
T  14029469 cccaattcgagtagggatcacactcc-agaatttagag 14029433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 6e-63; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 366 - 524
Target Start/End: Original strand, 44085658 - 44085816
Alignment:
Q  366 aacaaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaacttcttaagtgtagtatgatccttttgagcc 465  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||    
T  44085658 aacaaactagtgagtcaccaattttctagaaccaatgagtcactactaaatggcaacatagtcattccacttgttaggtgtagtatgatccttttgggcc 44085757  T
Q  466 tccctaattcattggactcaatctccaatctcacttcattgcagcccatatccttgctc 524  Q
    |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  44085758 tccctaattcattggactcaatcttcaatctcactttattgcggcccatatccttgctc 44085816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 365 - 529
Target Start/End: Original strand, 43147163 - 43147323
Alignment:
Q  365 taacaaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaacttcttaagtgtagtatgatccttttgagc 464  Q
    ||||||||||||||||||  ||||||||| ||||||  ||||| ||||||||||||   ||||||||| |||||||| |||||||||||||||||| |||    
T  43147163 taacaaactagtgagtcatgaatcttctaaaaccaacaagtcactactaaatggca---tagtcattccacttcttaggtgtagtatgatcctttt-agc 43147258  T
Q  465 ctccctaattcattggactcaatctccaatctcacttcattgcagcccatatccttgctcgtatc 529  Q
    ||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  43147259 ctccctaattcgttggactcaatctcaaatcccacttcattgcagcccatatccttgctcgtatc 43147323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 254 - 358
Target Start/End: Original strand, 44085522 - 44085625
Alignment:
Q  254 attgataggacccaattcgagtagggatcacactcctagaatttagagataaagaagagaattgactgaatttcattgatgattgtaatagagaaaatac 353  Q
    ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  44085522 attgatacgatccaatttgagtagggatcacactcctagaatttagagataaagaagagaattgact-aatttcattgataattgtaatagagaaaatac 44085620  T
Q  354 aagat 358  Q
    |||||    
T  44085621 aagat 44085625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 263 - 358
Target Start/End: Original strand, 43147036 - 43147130
Alignment:
Q  263 acccaattcgagtagggatcacactcctagaatttagagataaagaagagaattgactgaatttcattgatgattgtaatagagaaaatacaagat 358  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  43147036 acccaattcgagtagggatcacactcctagaaattagaggtaaagaagagaatcgact-aatttcattgattattgtaatagagaaaatacaagat 43147130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 23405475 - 23405519
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcctagaatttagag 301  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||||    
T  23405475 tgatacgacccaattcaagtagggatcacactcc-agaatttagag 23405519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 26247281 - 26247212
Alignment:
Q  360 cttcgtaacaaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtca 429  Q
    |||| |||||| ||||||||||| ||||||||||| || ||||| |||  ||| ||| ||||||||||||    
T  26247281 cttcctaacaagctagtgagtcatcaatcttctagcactaatgaatcaccacttaatagcaacatagtca 26247212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 9e-53; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 355 - 528
Target Start/End: Original strand, 10129757 - 10129930
Alignment:
Q  355 agatgcttcgtaacaaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaacttcttaagtgtagtatgat 454  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| |||| ||| |||||||| |||    
T  10129757 agatccttcctaacaaactagtgagtcaccaatcttctagaactaatgagtcactactaaatggtaacatagtcattccacttgttaggtgtagtaagat 10129856  T
Q  455 ccttttgagcctccctaattcattggactcaatctccaatctcacttcattgcagcccatatccttgctcgtat 528  Q
    |||||||  |||| ||||||||||||||||||||| ||||||||  |||||| |||| ||||||||||||||||    
T  10129857 ccttttggccctcactaattcattggactcaatcttcaatctcaaatcattgtagccaatatccttgctcgtat 10129930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 256 - 358
Target Start/End: Original strand, 10129632 - 10129734
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcct-agaatttagagataaagaagagaattgactgaatttcattgatgattgtaatagagaaaataca 354  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| |||||||    
T  10129632 tgatacgacccaattcgagtagggatcacactccttagaatttagagataaagaagagatttgatt-aatttcattgatgattgtaatagaggaaataca 10129730  T
Q  355 agat 358  Q
    ||||    
T  10129731 agat 10129734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 15831713 - 15831658
Alignment:
Q  369 aaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacat 424  Q
    |||||||||||||| |||||||| ||||| |||||||||||| | |||||||||||    
T  15831713 aaactagtgagtcatcaatcttccagaactaatgagtcattatttaatggcaacat 15831658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 27387770 - 27387726
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcctagaatttagag 301  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||    
T  27387770 tgatacgacccaattcgagtagggatcacactcc-agaatttagag 27387726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 55322334 - 55322377
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcctagaatttaga 300  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||    
T  55322334 tgatacgacccaattcgagtagggatcacactcc-agaatttaga 55322377  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 33256503 - 33256456
Alignment:
Q  365 taacaaactagtgagtcaccaatcttctagaaccaatgagtcattact 412  Q
    ||||||||||||||||||| |||||||||||| ||| |||||| ||||    
T  33256503 taacaaactagtgagtcacaaatcttctagaatcaacgagtcactact 33256456  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 36050813 - 36050780
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcc 289  Q
    ||||| ||||||||||||||||||||||||||||    
T  36050813 tgatacgacccaattcgagtagggatcacactcc 36050780  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 36054072 - 36054039
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcc 289  Q
    ||||| ||||||||||||||||||||||||||||    
T  36054072 tgatacgacccaattcgagtagggatcacactcc 36054039  T

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Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 355 - 529
Target Start/End: Original strand, 16389342 - 16389512
Alignment:
Q  355 agatgcttcgtaacaaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaacttcttaagtgtagtatgat 454  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| ||| |||||||| |||    
T  16389342 agatccttcctaacaaactagtgagtcaccaatcttctagaactaatgagtcactactaaatggcaacatagtcattccacttgttaggtgtagtaagat 16389441  T
Q  455 ccttttgagcctccctaattcattggactcaatctccaatctcacttcattgcagcccatatccttgctcgtatc 529  Q
    || ||||  |||| ||||||||||||||||||    ||||| ||  |||||| |||| |||||||||||||||||    
T  16389442 ccatttggccctcactaattcattggactcaa----caatcacaagtcattgtagccaatatccttgctcgtatc 16389512  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 256 - 358
Target Start/End: Original strand, 16389217 - 16389319
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcc-tagaatttagagataaagaagagaattgactgaatttcattgatgattgtaatagagaaaataca 354  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| | |||||||||||||||||||  |||| |||||||    
T  16389217 tgatacgacccaattcgagtagggatcacactccttagagtttagagataaagaagagatttga-ttaatttcattgatgattgtatcagaggaaataca 16389315  T
Q  355 agat 358  Q
    ||||    
T  16389316 agat 16389319  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 455
Target Start/End: Original strand, 33623997 - 33624099
Alignment:
Q  355 agatgcttcgtaacaaactagtgagtcaccaatcttctagaac--caatgagtcattactaaatggcaacatagtcattcaacttcttaagtgtagtatg 452  Q
    |||| |||| |||||||||||||||||| ||||| ||||||||   |||||||||  |||||| | ||||||| |||||| |||||||  |||||| |||    
T  33623997 agatccttcctaacaaactagtgagtcatcaatcctctagaacgataatgagtcacaactaaacgacaacataatcattctacttcttgggtgtagcatg 33624096  T
Q  453 atc 455  Q
    |||    
T  33624097 atc 33624099  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 4834870 - 4834825
Alignment:
Q  255 ttgataggacccaattcgagtagggatcacactcctagaatttagag 301  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||    
T  4834870 ttgatacgacccaatttgagtagggatcacactcc-agaatttagag 4834825  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 7426736 - 7426703
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcc 289  Q
    ||||| ||||||||||||||||||||||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactcc 7426703  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 13886691 - 13886647
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcctagaatttagag 301  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||    
T  13886691 tgatacgacccaatttgagtagggatcacactcc-agaatttagag 13886647  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 7422797 - 7422765
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactc 288  Q
    ||||| |||||||||||||||||||||||||||    
T  7422797 tgatacgacccaattcgagtagggatcacactc 7422765  T

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Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 373 - 529
Target Start/End: Complemental strand, 23408183 - 23408027
Alignment:
Q  373 tagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaacttcttaagtgta--gtatgatccttttgagcctccct 470  Q
    |||||||||||||||  |||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||  |||||||| ||||| || ||| |    
T  23408183 tagtgagtcaccaat--tctagaaccaatgagtcactactaaatgacaacatagtcattccacttcttaggtgtatagtatgatcattttgggcttccgt 23408086  T
Q  471 aattcattggactcaatctccaatctcacttcattgcagcccatatccttgctcgtatc 529  Q
    |||||||||| || ||||||||||| |||||||||||| || ||||||||||| |||||    
T  23408085 aattcattggtctaaatctccaatcccacttcattgcaacctatatccttgcttgtatc 23408027  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 527
Target Start/End: Complemental strand, 8715860 - 8715783
Alignment:
Q  450 atgatccttttgagcctccctaattcattggactcaatctccaatctcacttcattgcagcccatatccttgctcgta 527  Q
    ||||||||||||   |||| ||| |||||| | |||||||||||||||| ||||||||| || |||||||||||||||    
T  8715860 atgatccttttggatctccataactcattgaagtcaatctccaatctcaattcattgcaacctatatccttgctcgta 8715783  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 41709651 - 41709606
Alignment:
Q  255 ttgataggacccaattcgagtagggatcacactcctagaatttagag 301  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||||    
T  41709651 ttgatacgacccaattcgagtagagatcacactcc-agaatttagag 41709606  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 24108848 - 24108815
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcc 289  Q
    ||||| ||||||||||||||||||||||||||||    
T  24108848 tgatacgacccaattcgagtagggatcacactcc 24108815  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 373 - 529
Target Start/End: Complemental strand, 42202916 - 42202760
Alignment:
Q  373 tagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaacttcttaagtgtagtatgatccttttgagcctccctaa 472  Q
    ||||||||||  |||||| || |||| |||||||| |||||||||| ||||||||||||  |||||||| ||||||||||||||||||  | ||||||||    
T  42202916 tagtgagtcattaatcttataaaaccgatgagtcactactaaatggtaacatagtcatttcacttcttatgtgtagtatgatccttttaggtctccctaa 42202817  T
Q  473 ttcattggactcaatctccaatctcacttcattgcagcccatatccttgctcgtatc 529  Q
    ||||||||| ||||||| |||||||||||||| |||||| ||||  || ||||||||    
T  42202816 ttcattggattcaatctacaatctcacttcatcgcagcctatattatttctcgtatc 42202760  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 42202990 - 42202957
Alignment:
Q  325 ttcattgatgattgtaatagagaaaatacaagat 358  Q
    ||||||||||||||||||||||| ||||||||||    
T  42202990 ttcattgatgattgtaatagagataatacaagat 42202957  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 256 - 349
Target Start/End: Original strand, 23841769 - 23841861
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcctagaatttagagataaagaagagaattgactgaatttcattgatgattgtaatagagaaa 349  Q
    ||||| || ||||||  |||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  23841769 tgatacgatccaatttaagtagggatcacactcttagaatttacagataaagaagagaattgact-aatttcatagatgattgtaataaagaaa 23841861  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 2534511 - 2534557
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcctagaatttagaga 302  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  2534511 tgatacgacccaatttgagtagggatcaaactcctagaatttagaga 2534557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 30452847 - 30452803
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcctagaatttagag 301  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||    
T  30452847 tgatacgacccaattcgagtagggatcacactcc-agaatttagag 30452803  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 30456456 - 30456412
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcctagaatttagag 301  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||    
T  30456456 tgatacgacccaattcgagtagggatcacactcc-agaatttagag 30456412  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 42513062 - 42513095
Alignment:
Q  256 tgataggacccaattcgagtagggatcacactcc 289  Q
    ||||| ||||||||||||||||||||||||||||    
T  42513062 tgatacgacccaattcgagtagggatcacactcc 42513095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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