View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_16 (Length: 526)
Name: NF8919_low_16
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 71 - 511
Target Start/End: Original strand, 863676 - 864118
Alignment:
| Q |
71 |
ttataaggtaaattaatcattttatggaacatataataggatgagatgttggagccagcagtgaatggaacaaagaatgtgattatagcgtctgcggaag |
170 |
Q |
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| T |
863676 |
ttataaggtgaattaatcattttatggaacatataataggatgagatgttagagccagcagtgaatggaactaagaatgtgattatagcgtccgcggaag |
863775 |
T |
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| Q |
171 |
caaaagtgcgacgtgttgtgttcacttcatcgattggaacggtctatatggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtga |
270 |
Q |
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| T |
863776 |
ctaaagtgcgacgtgttgttttcacttcatcgattggaacggtctatatggacccaaatactagtagagatgttgtcgttgatgaatcatattggagtga |
863875 |
T |
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| Q |
271 |
tttagagcattgcaagaacaccaaggtttgattaattcactatgttcgtcttgtgcagagatctggttattaattaattaggtgatgaataatttaaatt |
370 |
Q |
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| T |
863876 |
tttagagcattgcaagaacaccaaggtttgattaattcactctgttcgtcttgtgcagagatctggttattaattaattaggtgatgaataatttaactt |
863975 |
T |
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| Q |
371 |
attttt--tgtgtgcagaactggtattgttatgggaagacagtggctgaacaatcagcatgggatatagcaaaagaaaatcaagttgatttggttgtggt |
468 |
Q |
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| T |
863976 |
tttttttgtgtgtgcagaactggtattgttatgggaagacagtggctgaacaatcagcatgggatatagcaaaagaaaatcaagttgatttggttgtggt |
864075 |
T |
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| Q |
469 |
gaacccagttgtggttcttggaccattgctacaaccaacaatt |
511 |
Q |
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| T |
864076 |
gaacccagttgtagttcttggaccattgttacaaccaacaatt |
864118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 304
Target Start/End: Original strand, 854092 - 854182
Alignment:
| Q |
213 |
tctatatggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggtttgatta |
304 |
Q |
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| T |
854092 |
tctatttggacccaaatacaagtagggttgttgtggtt-atgattcatattggagtgatttagaatattgcaagaacaccaaggtttgatta |
854182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 384 - 510
Target Start/End: Original strand, 45243172 - 45243298
Alignment:
| Q |
384 |
agaactggtattgttatgggaagacagtggctgaacaatcagcatgggatatagcaaaagaaaatcaagttgatttggttgtggtgaacccagttgtggt |
483 |
Q |
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| T |
45243172 |
agaattggtattgctatgggaaagcagtggcagaagcagcagcatgggatgtagcaaaagagaaaggtgtggatttggttgtagtgaatccagttttggt |
45243271 |
T |
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| Q |
484 |
tcttggaccattgctacaaccaacaat |
510 |
Q |
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| T |
45243272 |
tcttggaccattgctacaacctacaat |
45243298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 297
Target Start/End: Original strand, 45242914 - 45243091
Alignment:
| Q |
120 |
tggagccagcagtgaatggaacaaagaatgtgattatagcgtctgcggaagcaaaagtgcgacgtgttgtgttcacttcatcgattggaacggtctatat |
219 |
Q |
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| T |
45242914 |
tggagccagcagtgaatggagcaaagaatgtgatcatagctggtgcagaagcaaaagtgaggcgcgtggttttcacatcatcaattggtgcagtctatat |
45243013 |
T |
|
| Q |
220 |
ggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggt |
297 |
Q |
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| T |
45243014 |
ggaccccaataggagtgttgatgtagaggttgatgagtcttgctggagtgatttggagttttgcaagaaaaccaaggt |
45243091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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