View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_18 (Length: 501)
Name: NF8919_low_18
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 23992534 - 23993004
Alignment:
| Q |
15 |
tcagatttgagttcacattgatagagttgcatgagttagggtttattcaacttcaacacactatactataatggatattcctccaactaagaaacgacga |
114 |
Q |
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| T |
23992534 |
tcagatttgagttcacattgatagagttgcatgagttagggtttattcaacttcaacacactatactataatggatattcctccaactaagaaacgacga |
23992633 |
T |
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| Q |
115 |
tgtcgatcagggagatctattgcaccgtatccaaccttgttcctcccggatgaactcatcatagaaatcctatcttttcttagggttaaaaacattgtgc |
214 |
Q |
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| T |
23992634 |
tgtcgatcagggagatctattgcaccgtatccaaccttgttcctcccggatgaactcatcatagaaatcctatcttttcttagggttaaaaacattgtgc |
23992733 |
T |
|
| Q |
215 |
aactcaagtgcctgagcaagtcatggttcactatcatatccgatccaacctttgttgaaaagcaccttaagaattcatctaaacacccacatctcacatt |
314 |
Q |
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| T |
23992734 |
aactcaagtgcctgagcaagtcatggttcactatcatatccgatccaacctttgtcgaaaagcaccttaagaattcatctaaacacccacatctcacatt |
23992833 |
T |
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| Q |
315 |
attttggaaccaacgcaaagaggggtttaacatcgcctccttccccatgaatcgtttattcaaaaatccatccatcactgtttacagccgcaatctccat |
414 |
Q |
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| T |
23992834 |
attttggaaccaacgcaaagaggggtttaacatcgcctccttccccatgaatcgtttattcaaaaatccatccatcactgtttacagccgcaatctccat |
23992933 |
T |
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| Q |
415 |
cgtttgaagaaccattgcattgttgttggttcttgtaacggattactctgcttggttttccaatctgatgt |
485 |
Q |
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| T |
23992934 |
cgtttgaagaaccattgcattgttgttggttcttgtaacggattactctgcttggttttccaatcttatgt |
23993004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 202 - 465
Target Start/End: Original strand, 15507902 - 15508171
Alignment:
| Q |
202 |
aaaaacattgtgcaactcaagtgcctgagcaagtcatggttcactatcatatccgatccaacctttgttgaaaagcaccttaagaattcatctaaacacc |
301 |
Q |
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|||| ||| ||||||||||| ||| |||||||||||||| || ||||||| ||||||||||| | ||||||||||||||||| || || || | | |
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| T |
15507902 |
aaaaccatcgtgcaactcaaatgcttgagcaagtcatggaaagctctcatatctgatccaaccttcatcgaaaagcaccttaagaagtcgtcacaaaagc |
15508001 |
T |
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| Q |
302 |
cacatctcacattattttggaaccaacgcaaagaggggtttaacatcgcctccttccccatgaatcgtttattcaaaaatccatccatcactgtttacag |
401 |
Q |
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| T |
15508002 |
cacaactcacgttatattggaaccaacgcataaaaggttttaatcttgtacccttccctgtgcatcgtttactaaaaaatccatccattactatttacag |
15508101 |
T |
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| Q |
402 |
ccgcaatctccatcgtttg------aagaaccattgcattgttgttggttcttgtaacggattactctgc |
465 |
Q |
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| T |
15508102 |
tgacaatttccatcatttgaagtcaaagaacaattgcatggtggttggttcttgtaatggatttctctgc |
15508171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 293
Target Start/End: Original strand, 24001316 - 24001458
Alignment:
| Q |
151 |
ttgttcctcccggatgaactcatcatagaaatcctatcttttcttagggttaaaaacattgtgcaactcaagtgcctgagcaagtcatggttcactatca |
250 |
Q |
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| T |
24001316 |
ttgttcctcccagacgaactcatagcagaaatcctatctcaccttactgttaaaaacatcttaatattcaaatgtctgagcaagtcatggaacactttca |
24001415 |
T |
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| Q |
251 |
tatccgatccaacctttgttgaaaagcaccttaagaattcatc |
293 |
Q |
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| T |
24001416 |
tctccgatccaacctttgtccaaatgcatcttaagaagtcatc |
24001458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 482
Target Start/End: Original strand, 24001539 - 24001647
Alignment:
| Q |
374 |
tcaaaaatccatccatcactgtttacagccgcaatctccatcgtttgaagaaccattgcattgttgttggttcttgtaacggattactctgcttggtttt |
473 |
Q |
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| T |
24001539 |
tcaaagatccatccatcaccgttgatagcaacgatctctaccgtttgagtagccattgtatggttgttggttcatgtaatggattgatctgcttgctttt |
24001638 |
T |
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| Q |
474 |
ccaatctga |
482 |
Q |
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| T |
24001639 |
ccattctga |
24001647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 11346066 - 11345950
Alignment:
| Q |
178 |
gaaatcctatcttttcttagggttaaaaacattgtgcaactcaagtgcctgagcaagtcatggttcactatcatatccgatccaacctttgttgaaaagc |
277 |
Q |
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||||||||||| || |||| || |||| |||||| ||| |||| ||| |||||||||||||| |||| |||| ||||||||| |||| || |||| | |
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| T |
11346066 |
gaaatcctatcattacttaacgtgaaaaccattgtccaattcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaac |
11345967 |
T |
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| Q |
278 |
accttaagaattcatct |
294 |
Q |
| |
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||||||| || |||||| |
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| T |
11345966 |
accttaaaaagtcatct |
11345950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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