View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8919_low_19 (Length: 497)

Name: NF8919_low_19
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8919_low_19
NF8919_low_19
[»] chr4 (9 HSPs)
chr4 (283-486)||(12043617-12043822)
chr4 (1-98)||(12044006-12044103)
chr4 (14-97)||(30449480-30449563)
chr4 (162-207)||(12043897-12043942)
chr4 (10-81)||(53883312-53883383)
chr4 (10-81)||(53889426-53889497)
chr4 (10-65)||(15333042-15333097)
chr4 (10-81)||(37500791-37500862)
chr4 (48-88)||(41771363-41771403)
[»] chr1 (9 HSPs)
chr1 (10-97)||(8806894-8806981)
chr1 (9-81)||(7577170-7577242)
chr1 (13-98)||(19492578-19492663)
chr1 (10-81)||(49835102-49835173)
chr1 (8-81)||(48743695-48743768)
chr1 (9-97)||(17940798-17940887)
chr1 (20-97)||(17862603-17862680)
chr1 (8-81)||(51739581-51739654)
chr1 (11-81)||(43276573-43276643)
[»] chr3 (3 HSPs)
chr3 (5-81)||(41708545-41708621)
chr3 (8-81)||(36653149-36653221)
chr3 (13-81)||(2004284-2004352)
[»] chr2 (3 HSPs)
chr2 (10-97)||(31493756-31493843)
chr2 (7-83)||(22595647-22595723)
chr2 (10-81)||(35786186-35786257)
[»] scaffold0361 (1 HSPs)
scaffold0361 (8-81)||(10141-10214)
[»] chr8 (6 HSPs)
chr8 (10-89)||(9583950-9584029)
chr8 (10-98)||(25302791-25302879)
chr8 (13-81)||(9949019-9949087)
chr8 (20-81)||(12141705-12141766)
chr8 (8-81)||(16920471-16920543)
chr8 (8-81)||(518877-518950)
[»] scaffold0098 (1 HSPs)
scaffold0098 (10-97)||(17858-17946)
[»] chr7 (4 HSPs)
chr7 (13-81)||(5372502-5372570)
chr7 (10-77)||(17765716-17765783)
chr7 (42-81)||(44266556-44266595)
chr7 (13-58)||(11395912-11395957)
[»] chr6 (2 HSPs)
chr6 (13-98)||(13821800-13821885)
chr6 (323-367)||(26331899-26331943)
[»] chr5 (3 HSPs)
chr5 (13-66)||(6360322-6360375)
chr5 (10-55)||(26002823-26002868)
chr5 (5-81)||(2310876-2310952)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 283 - 486
Target Start/End: Complemental strand, 12043822 - 12043617
Alignment:
Q  283 taattcaataagtcattcaagacat--tctgatcagctgcaactccattatctccttcattctgagttcctccttccaaatcttcacatttaattattgg 380  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12043822 taattcaataagtcattcaagacatattctgatcagctgcaactccattatctccttcattctaagttcctccttccaaatcttcacatttaattattgg 12043723  T
Q  381 ataagtaccttgacaagaaataacgatatctttccaaaactctatccataaccactttttcaatttgctttccttcatctgtttttgcaaatttgcttga 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12043722 ataagcaccttgacaagaaataacgatatctttccaaaactctatccataaccactttttcaatttgctttccttcatctgtttttgcaaatttgcttga 12043623  T
Q  481 tgtcca 486  Q
    ||||||    
T  12043622 tgtcca 12043617  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 12044103 - 12044006
Alignment:
Q  1 tctcatgatcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaagatcccacataatagac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12044103 tctcatgatcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaagatcccacataatagac 12044006  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 30449563 - 30449480
Alignment:
Q  14 gttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaagatcccacataataga 97  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||    
T  30449563 gttgtcaaaatcgggatcccactaaagatcgttggggtgtagaaaaagcgtagatcataggatcgtaagatcccacataataga 30449480  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 12043942 - 12043897
Alignment:
Q  162 cacctttcatcaaaaacactttcattaatcatcattggaattgtct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12043942 cacctttcatcaaaaacactttcattaatcatcattggaattgtct 12043897  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 53883383 - 53883312
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||| | ||||||| ||||    
T  53883383 catggttgtcgaaatcaggatccgactaaagatcattgggatatagaaaaagcgtagattgtaggatagtaa 53883312  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 53889497 - 53889426
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||| | ||||||| ||||    
T  53889497 catggttgtcgaaatcaggatccgactaaagatcattgggatatagaaaaagcgtagattgtaggatagtaa 53889426  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 15333042 - 15333097
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgta 65  Q
    |||||||||||||||||||||| |||  ||||||||| |||||| |||||| ||||    
T  15333042 catggttgtcaaaatcgggatctcacctaagatcgtttgggtattgaaaaatcgta 15333097  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 37500791 - 37500862
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||||||||||||||||||||| |||  ||||||  | |||||| |||||| ||||  ||||||||||||||    
T  37500791 catggttgtcaaaatcgggatctcacctaagatctctagggtattgaaaaatcgtaaatcgtaggatcgtaa 37500862  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 41771403 - 41771363
Alignment:
Q  48 gggtatagaaaaagcgtaggtcgtaggatcgtaagatccca 88  Q
    ||||||| ||| ||||||||| |||||||||||||||||||    
T  41771403 gggtataaaaagagcgtaggttgtaggatcgtaagatccca 41771363  T

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Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 8806894 - 8806981
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaagatcccacataataga 97  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  8806894 catggttgtcaaaatcgggatcctactaaagattgttggggtatagaaaaggcgtagatcgtaggatcgtaagatcccacataataga 8806981  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 7577170 - 7577242
Alignment:
Q  9 tcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  7577170 tcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtagatcgtaggattgtaa 7577242  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 19492578 - 19492663
Alignment:
Q  13 ggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaagatcccacataatagac 98  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||  ||||||||    
T  19492578 ggttgtcaaaatcgggatcctactaaagatcgttggggcatagaaagagcgtagatcgtaggatcgtaagatcccatctaatagac 19492663  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 49835173 - 49835102
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  49835173 catggttgtcaaaatcgggatctcactaaagatcgttggggtatggaaaaagcgtagatcgtaggatcgtaa 49835102  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 48743695 - 48743768
Alignment:
Q  8 atcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| ||||||||| ||||    
T  48743695 atcatggttgtcaaaatcgagatcccactaaagatcgttggggtatagaaagagtgtagatcgtaggatggtaa 48743768  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 17940887 - 17940798
Alignment:
Q  9 tcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaa-gcgtaggtcgtaggatcgtaagatcccacataataga 97  Q
    |||||||||| |||||||| ||||||||| ||||| ||||| |||||||||| | |||| ||||||||||||||||||||||||| ||||    
T  17940887 tcatggttgttaaaatcggaatcccactatagatcattgggttatagaaaaaagagtagatcgtaggatcgtaagatcccacatactaga 17940798  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 17862603 - 17862680
Alignment:
Q  20 aaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaagatcccacataataga 97  Q
    ||||||||||||| |||| ||||| || ||||||||||||||||||| || | ||||||| |||| ||||||| ||||    
T  17862603 aaaatcgggatcctactatagatcatttgggtatagaaaaagcgtagatcattggatcgttagattccacatattaga 17862680  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 51739654 - 51739581
Alignment:
Q  8 atcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||| ||||||||||||||||||| |||  ||||||||| |||||| |||||| ||||  ||||||||||||||    
T  51739654 atcaaggttgtcaaaatcgggatctcacctaagatcgtttgggtattgaaaaatcgtaaatcgtaggatcgtaa 51739581  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 43276643 - 43276573
Alignment:
Q  11 atggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||||||||||| ||||||||||||  ||||||||| ||| ||||||| ||||||  || |||||||||||    
T  43276643 atggttgtcaaactcgggatcccaccgaagatcgtttgggcatagaaagagcgtaaatcataggatcgtaa 43276573  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 41708545 - 41708621
Alignment:
Q  5 atgatcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41708545 atgatcatggttgtcaaaatcgagatcccactaaagatcgttggggtatagaaagagcgtagatcgtaggatcgtaa 41708621  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 36653221 - 36653149
Alignment:
Q  8 atcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  36653221 atcatggttgtcaaaatcgggatcccactaaagatcg-tgaggtatagaaaaagcgtagatcgtaggatcgtaa 36653149  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 2004284 - 2004352
Alignment:
Q  13 ggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||| ||||||  ||||| ||||||||    
T  2004284 ggttgtcaaaatcgagttcctactaaagatcgttggggcatagaaagagcgtaaatcgtaagatcgtaa 2004352  T

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Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 31493843 - 31493756
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaagatcccacataataga 97  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||    
T  31493843 catggctgtcaaaatcgggattcaactaaagatcgttggggtatagaaaaagcgtagatcgtaggattgtaagatcccacctaataga 31493756  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 22595647 - 22595723
Alignment:
Q  7 gatcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaaga 83  Q
    |||||||||||||||||||||||||| |||||||||||||  |||||| ||||||||||| |||||||||| |||||    
T  22595647 gatcatggttgtcaaaatcgggatccaactaaagatcgttaaggtataaaaaaagcgtagatcgtaggatcttaaga 22595723  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 35786257 - 35786186
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| || |||| ||||||||||||||    
T  35786257 catggttgtcaaaatcgagatcccactaaagatcgtaggggtatagaaagagtgtagatcgtaggatcgtaa 35786186  T

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Target: scaffold0361 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 10141 - 10214
Alignment:
Q  8 atcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  10141 atcatggttgtcaaaatcgggatcccactaaagatcgttgaggtatagaaaaagggtagatcgtaggatcgtaa 10214  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 9584029 - 9583950
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaagatcccac 89  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||  |||| ||||||||||||||||    
T  9584029 catggttgtcaaaatcgggatctcactaaagatcgttggggtacagaaaaagcgtagaccgtaagatcgtaagatcccac 9583950  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 25302879 - 25302791
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaagatcccacataatagac 98  Q
    |||||||||||||||| |||||||||||||||  |||| ||||||| |||||||||| |||||||||||||||||||||  ||||||||    
T  25302879 catggttgtcaaaatccggatcccactaaagactgttgaggtataggaaaagcgtagatcgtaggatcgtaagatcccatgtaatagac 25302791  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 9949087 - 9949019
Alignment:
Q  13 ggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||| ||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||    
T  9949087 ggttatcaaaatcgagatcccactagagatcgttgaggtatagaaaaagcgtagatcgtaggatcgtaa 9949019  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 12141705 - 12141766
Alignment:
Q  20 aaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||  | ||||||||||||    
T  12141705 aaaatcgggatcccactaaagatcgttagagtatagaaaaagcgtacattgtaggatcgtaa 12141766  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 16920471 - 16920543
Alignment:
Q  8 atcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    ||||||||||||||||||| ||||||||||| ||| ||| |||||| | |||||| ||| ||||||||| ||||    
T  16920471 atcatggttgtcaaaatcgagatcccactaacgattgttcgggtattg-aaaagcatagatcgtaggattgtaa 16920543  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 518877 - 518950
Alignment:
Q  8 atcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    ||||||||||||||| ||||||| | || |||||||||| |||  || ||||||||||  ||||| ||||||||    
T  518877 atcatggttgtcaaattcgggattcaaccaaagatcgtttgggcgtaaaaaaagcgtaaatcgtaagatcgtaa 518950  T

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Target: scaffold0098 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 17858 - 17946
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtat-agaaaaagcgtaggtcgtaggatcgtaagatcccacataataga 97  Q
    ||||||||| |||||||||||||||||| ||||| ||||||||| | ||||||||||| ||||||||||||||||||||| ||| ||||    
T  17858 catggttgttaaaatcgggatcccactatagatcattggggtataaaaaaaagcgtagatcgtaggatcgtaagatcccaaatattaga 17946  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 5372570 - 5372502
Alignment:
Q  13 ggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  5372570 ggttgtcaaaatcggaatcccactaaagatcgttggggtatagaaaaagcgtagatcgtaagatggtaa 5372502  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 17765783 - 17765716
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatc 77  Q
    |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||    
T  17765783 catgtttgtcaaaatcgggatctcactaaagatcgttggggtacagaaaaagcgtagatcgtaagatc 17765716  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 44266556 - 44266595
Alignment:
Q  42 tcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  44266556 tcgttggggtatagaaagagcgtagatcgtaggatcgtaa 44266595  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 11395957 - 11395912
Alignment:
Q  13 ggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaa 58  Q
    |||||||||||| ||||||| | ||||||||||||||| |||||||    
T  11395957 ggttgtcaaaattgggatcctattaaagatcgttggggcatagaaa 11395912  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 13821800 - 13821885
Alignment:
Q  13 ggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaagatcccacataatagac 98  Q
    ||||||||||||||| |||| |||||||||| |||||| ||||||| ||| ||| |||||||||||||||||||| | ||||||||    
T  13821800 ggttgtcaaaatcggtatcctactaaagatcattggggcatagaaagagcctagatcgtaggatcgtaagatcccgcctaatagac 13821885  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 26331899 - 26331943
Alignment:
Q  323 ctccattatctccttcattctgagttcctccttccaaatcttcac 367  Q
    ||||||||||||||||||| || ||||||||||||||||||||||    
T  26331899 ctccattatctccttcattttgggttcctccttccaaatcttcac 26331943  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 6360375 - 6360322
Alignment:
Q  13 ggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtag 66  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  6360375 ggttgtcaaaatcgggatcctactaaagatcgttggggcatagaaagagcgtag 6360322  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 26002823 - 26002868
Alignment:
Q  10 catggttgtcaaaatcgggatcccactaaagatcgttggggtatag 55  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||    
T  26002823 catggttgtcaaaattgagatctcactaaagatcgttggggtatag 26002868  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 2310952 - 2310876
Alignment:
Q  5 atgatcatggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 81  Q
    |||| ||||||||||||| ||||||| |||  |||||||||| |||||| ||||||| |||  ||| ||||||||||    
T  2310952 atgaccatggttgtcaaactcgggattccatcaaagatcgtttgggtattgaaaaagtgtaaatcgcaggatcgtaa 2310876  T

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