View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_21 (Length: 473)
Name: NF8919_low_21
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 457
Target Start/End: Complemental strand, 7175740 - 7175291
Alignment:
| Q |
8 |
atggtgttaactgtatgtgtttcagcaccaattacagacctgtcaaacctgttcctgcaactgtttgctgctttccacccatgcaacaactgttgtgcac |
107 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| |
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| T |
7175740 |
atggtgttaaccgtatgtgtttcagcaccaattacagacctgtcaaacctgttcctgcaattgtttgctgctttccacccatgcagcaactgatgtgcac |
7175641 |
T |
|
| Q |
108 |
gctcaacaattgactggctgctctcgggcatattttgccaaacttgaatattccgacttttccacaagccccacactaaagtaacaaataactgaatttt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7175640 |
gctcaacaattgactggctgctctcgggcatattttgccaaacttgaatattccgacttttccacaagctccacactaaagtaacaaataactgaatttt |
7175541 |
T |
|
| Q |
208 |
agtatgtggcagattttgcagtaaggcggacactatatctgctgctgtgttatttgtttacatcgccacatatatatcgtttgagaggtgactgtcccgc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7175540 |
agtatgtggcagattttgcagtaaggcggacactatatctgctgctgtgttatttgtttgcatcgccacatatatatcgtttgagaggtgactgtcccgc |
7175441 |
T |
|
| Q |
308 |
caaacgctcctcgctctttgacaatcaaacagaacatgaaggtcatcttcataatttccatcacacatagaacacatagaggtacagttcactcttttat |
407 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175440 |
caaatgctcctcgctctttgacaatcaaacagaacatgaaggtcatcttcataatttccatcacacatagaacacatagaggtacagttcactcttttat |
7175341 |
T |
|
| Q |
408 |
ctaacagtttggcacgagttggtaagcatccccggcatattctccatatc |
457 |
Q |
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| T |
7175340 |
ctaacagtttggcacgagttggtaagcatcccaggcatattctccatatc |
7175291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 7 - 457
Target Start/End: Complemental strand, 26622283 - 26621833
Alignment:
| Q |
7 |
tatggtgttaactgtatgtgtttcagcaccaattacagacctgtcaaacctgttcctgcaactgtttgctgctttccacccatgcaacaactgttgtgca |
106 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||| |||||| |
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| T |
26622283 |
tatggtgttaaccgtatttgtttcagcaccaattacagacctgtcaaacctgttcctgcacctgtttgctgttgtccacccatgcagcaactgatgtgca |
26622184 |
T |
|
| Q |
107 |
cgctcaacaattgactggctgctctcgggcatattttgccaaacttgaatattccgacttttccacaagccccacactaaagtaacaaataactgaattt |
206 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
26622183 |
cgctcaacaattgactggctgctctcggacatattttgccaaacttgaatattccagcttttccacaagctccacactaaagtaacaaataactggattt |
26622084 |
T |
|
| Q |
207 |
tagtatgtggcagattttgcagtaaggcggacactatatctgctgctgtgttatttgtttacatcgccacatatatatcgtttgagaggtgactgtcccg |
306 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26622083 |
tagtatgtggcagattttgtagtaaggcaaacactatatctgctgatgtgttatttgtttgcatcgccacatatatatcgtttgagaggtgactgtcccg |
26621984 |
T |
|
| Q |
307 |
ccaaacgctcctcgctctttgacaatcaaacagaacatgaaggtcatcttcataatttccatcacacatagaacacatagaggtacagttcactctttta |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26621983 |
ccaaacgctcctcgctctttgacaatcaaacaaaacatgaaggtcatcttcataatttccatcacacatagaacacacagaggtacagttcactctttta |
26621884 |
T |
|
| Q |
407 |
tctaacagtttggcacgagttggtaagcatccccggcatattctccatatc |
457 |
Q |
| |
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||||||| |||||||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
26621883 |
tctaacaatttggcacaagttggtaagcatccccgacatattctccatatc |
26621833 |
T |
|
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