View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8919_low_22 (Length: 459)

Name: NF8919_low_22
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8919_low_22
NF8919_low_22
[»] chr8 (5 HSPs)
chr8 (14-459)||(41811417-41811862)
chr8 (16-289)||(41798128-41798401)
chr8 (293-459)||(41798426-41798592)
chr8 (149-258)||(41804654-41804763)
chr8 (359-459)||(41804885-41804985)


Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Original strand, 41811417 - 41811862
Alignment:
Q  14 cagagaaaagattagcaacaagagaatttgagttctctgcacttcaggataaactttccgaggcagaggaagagttgtcaggaaaaatagttgccttcac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41811417 cagagaaaagattagcaacaagagaatttgagttctctgcacttcaggataaactttccgaggcagaggaagagtcgtcaggaaaaatagttgccttcac 41811516  T
Q  114 agcccaagttgattacctgcaaaaggacctgctttccttgcagaaagcaaaagaagagttggagcaccacatcgaaaaaatcagagaagaacatgcacag 213  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41811517 agcccaagttgataacctgcaaaaggacctgctttccttgcagaaagcaaaagaagagttggagcaccacatcgaaaaaatcagagaagaacatgcacag 41811616  T
Q  214 gccctcacaaaggttgacaatgaaaagaatgaattagccaacaaatacctagatcttttgagaatattggaagaacgggatgaagaatataaacacgttg 313  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41811617 gccctcacaaaggttgacaatgaaaataatgaattagccaacaaatacctagatcttttgagaatattggaagaacgggatgaagaatataaacacgttg 41811716  T
Q  314 atagttggtataatgactgtcaggtcaaacttaaacgtgcggagtggaagatgagaaaaatggcagaaatgtttcttgaagacattgattcaaaagatca 413  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41811717 atagttggtatagtgactgtcaggtcaaacttaaacgtgcggagtggaagatgagaaaaatggcagaaatgtttcttgaagacattgattcaaaagatca 41811816  T
Q  414 gatggtagctgatttggaacaccaagttgaagaactgaaaagagac 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41811817 gatggtagctgatttggaacaccaagttgaagaactgaaaagagac 41811862  T

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Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 41798128 - 41798401
Alignment:
Q  16 gagaaaagattagcaacaagagaatttgagttctctgcacttcaggataaactttccgaggcagaggaagagttgtcaggaaaaatagttgccttcacag 115  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||   |||||||||| | ||||||||||||    
T  41798128 gagagaagattagcaacaagagaatttgagttctctacacttcaggataaactttataaggcagaggaagaggcttcaggaaaaacaattgccttcacag 41798227  T
Q  116 cccaagttgattacctgcaaaaggacctgctttccttgcagaaagcaaaagaagagttggagcaccacatcgaaaaaatcagagaagaacatgcacaggc 215  Q
    | ||||||||  | |||||||||||| ||||||||||||||||| |||||||||| ||||||| |  |   || || |||| |||||||||  || | |     
T  41798228 ctcaagttgacaatctgcaaaaggacttgctttccttgcagaaaacaaaagaagaattggagctctgctgtgacaatatcaaagaagaacacacagaagt 41798327  T
Q  216 cctcacaaaggttgacaatgaaaagaatgaattagccaacaaatacctagatcttttgagaatattggaagaac 289  Q
    ||||| || |||||||||||||||||||||||||||| ||||| || | ||||||  ||||| |||||||||||    
T  41798328 cctcagaatggttgacaatgaaaagaatgaattagcctacaaaaacatggatcttcagagaacattggaagaac 41798401  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 293 - 459
Target Start/End: Original strand, 41798426 - 41798592
Alignment:
Q  293 atgaagaatataaacacgttgatagttggtataatgactgtcaggtcaaacttaaacgtgcggagtggaagatgagaaaaatggcagaaatgtttcttga 392  Q
    ||||||||||||||||  |||||||||||| |||||| ||  ||||||||||| ||  ||| ||| |||| |||  | |||||||||||  ||||| |||    
T  41798426 atgaagaatataaacaaattgatagttggtttaatgaatggaaggtcaaacttgaagttgcagagaggaaaatggaagaaatggcagaagagtttcgtga 41798525  T
Q  393 agacattgattcaaaagatcagatggtagctgatttggaacaccaagttgaagaactgaaaagagac 459  Q
    || |||||  |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  41798526 aggcattgggtcaaaagatcagatggtaactgatttggaaaaccaagttgaagacctgaaaagagac 41798592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 41804654 - 41804763
Alignment:
Q  149 ccttgcagaaagcaaaagaagagttggagcaccacatcgaaaaaatcagagaagaacatgcacaggccctcacaaaggttgacaatgaaaagaatgaatt 248  Q
    |||| |||||||||||||||||  |||||| | ||   |||||||||||| ||||||||||| |  ||||| ||  ||||||||||||||||||||||||    
T  41804654 ccttccagaaagcaaaagaagaaatggagctctactatgaaaaaatcagaaaagaacatgcaaaaaccctcgcagtggttgacaatgaaaagaatgaatt 41804753  T
Q  249 agccaacaaa 258  Q
    ||||||||||    
T  41804754 agccaacaaa 41804763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 459
Target Start/End: Original strand, 41804885 - 41804985
Alignment:
Q  359 ggaagatgagaaaaatggcagaaatgtttcttgaagacattgattcaaaagatcagatggtagctgatttggaacaccaagttgaagaactgaaaagaga 458  Q
    ||||||||  || |||||| |||  ||||||| ||| |||||  ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||    
T  41804885 ggaagatggaaataatggcggaagagtttcttcaaggcattgggtcaaaagatcagatggttgctgatttggaacaccaagttgaagacctgaaaaaaga 41804984  T
Q  459 c 459  Q
    |    
T  41804985 c 41804985  T

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