View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_24 (Length: 445)
Name: NF8919_low_24
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 27158143 - 27157732
Alignment:
| Q |
19 |
aattgtgatgaaggaattgaaaa-tgccaaaggatcgaagttgccctttccaaagagaaaatcccatcaacaaagaaggttcattcccagcaatcattaa |
117 |
Q |
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| T |
27158143 |
aattgtgatgaaggaattgaaaaatgccaaaggatcgaagttgccctttccaaagagaaaatcccatcaacaaagaaggttcattcccagcaatcattaa |
27158044 |
T |
|
| Q |
118 |
catattgcttataatcttgaaagaaaaggagcatgaaaattggaaaccattacacacaccatccacttctcctctatcccatgtggttccataaaggata |
217 |
Q |
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| T |
27158043 |
catattgcttataatcttgaaagaaaaggagcatgaaaattggaaaccattacacacaccatccacttctcctctatcccatgtggttccataaaggata |
27157944 |
T |
|
| Q |
218 |
gaggtgtataagtaatgttacatgtttgagatggagtgaaaatgaaagagggtttgaaatggtagcttggtttggttgttataggatttttcttgttggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27157943 |
gaggtgtataagtaatgttacatgtttgagatggagtgaaaatgaaagagggtttgaaatggtagcttggtttggttgttataggatttttcttgttggt |
27157844 |
T |
|
| Q |
318 |
tttaatgacatgaatagaaaggaatgatgacttaagtaggttgtgtggtgactttttgattaaagggtatataaattaaagtgaaataaggttcctaatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27157843 |
tttaatgacatgaatagaaaggaatgatgacttaagtaggttgtgtggtgactttttgattaaagggtatataaattaaagtgaaataaggttcctaatt |
27157744 |
T |
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| Q |
418 |
tagcatcttcca |
429 |
Q |
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| T |
27157743 |
tagcatcttcca |
27157732 |
T |
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