View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_26 (Length: 411)
Name: NF8919_low_26
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 136 - 396
Target Start/End: Original strand, 35640592 - 35640852
Alignment:
| Q |
136 |
tgccacaaagttagagaagcaaaaacaagaatatataatcaaaaactctaacactagtaaaaatactaagaccaaacttagcnnnnnnnnctaaagaaga |
235 |
Q |
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| T |
35640592 |
tgccacaaagttagagaagcaaaaacaagaaaatataatcaaaaactctaacactagtaaaaatactaagaccaaacttagcaaaaaaaactaaagaaga |
35640691 |
T |
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| Q |
236 |
caaacccaaggagatttttaatctgggaaaccaagaaatagcaagggttacgtgaaccacaaccatttgatataagggacggtgttgatatagaattgga |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35640692 |
caaacccaaggagatttttaatctgggaaaccaagaaatagcaagggttacgtgaaccacaaccatttgatataagggacggtgttgatatagaatttga |
35640791 |
T |
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| Q |
336 |
ctccacctcaatgctcataaagtcataatcatttctctactacgtacacacggttgaaaat |
396 |
Q |
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| T |
35640792 |
ctccacctcaatgctcataaagtcataatcatttctctactacgtacacacggttgaaaat |
35640852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35640456 - 35640560
Alignment:
| Q |
1 |
tattattaagaagttcaacattttgctttcgaatgacccaagcttgggacctcacctaacatgtgtgttggatttaaattattttggaaataaaggggct |
100 |
Q |
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| T |
35640456 |
tattattaagaagttcaacattttgctttcgaatgacccaagcttgggacctcacctaacatgtgtgttggatttaaattattttggaaataaaggggct |
35640555 |
T |
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| Q |
101 |
atccc |
105 |
Q |
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||||| |
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| T |
35640556 |
atccc |
35640560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 78
Target Start/End: Original strand, 35643959 - 35643989
Alignment:
| Q |
48 |
gacctcacctaacatgtgtgttggatttaaa |
78 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35643959 |
gacctcacctaacatgtgtgttggatttaaa |
35643989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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