View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_27 (Length: 402)
Name: NF8919_low_27
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 372
Target Start/End: Original strand, 47090028 - 47090387
Alignment:
| Q |
12 |
cctgtggaaggaaaagtgaggtgatagttagatacacgcgatgtagttgattnnnnnnnntgaaaacaccatagggcattcttcatttgatgttcaagat |
111 |
Q |
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| T |
47090028 |
cctgtggaaggaaaagtgaggtgatagttagatacactcgatgtagttgattaaaaaaa-tgaaaacaccatagggaattcttcatttgatgttcaagac |
47090126 |
T |
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| Q |
112 |
gaccaattttaggcaaattacagcagtatctctgtacaaaggcaattgatctaaaactcctgttttcaattggcagtggttggtttataggagaatcaca |
211 |
Q |
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| T |
47090127 |
gaccaattttaggcaaattacagcagtgtctctgtacaaaggcaattgatctaaaactcctgttttcaattggcagtggttggtttataggagaatcaca |
47090226 |
T |
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| Q |
212 |
tgctatctataggagaatactaaaatgtgctggcaatggaaacacaggttaaaaccaattatgtgccggctaaggaaacacaagtaaaaaacaattatgt |
311 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47090227 |
tgttatctataggagaatactaaaatgtgctggcaatggaaacacagattaaaaccaattatgtgccggctaaggaaacacaagtaaaaaacaattatgt |
47090326 |
T |
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| Q |
312 |
aaaggaaaagattaatcatcaaactgaaaataccttaaataacttaatattttaatacttc |
372 |
Q |
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| T |
47090327 |
aaaggaaaagactaatcatcaaactgaaaataccttaaataacttaatattttaatacttc |
47090387 |
T |
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