View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_28 (Length: 394)
Name: NF8919_low_28
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 33455088 - 33455451
Alignment:
| Q |
1 |
gaccattgagagtgcatatgtgagtgtgcctgtatgtgtgagagagaaggaattcaagaacccttcaatagctcagaagtgataacgatgtttgaaaact |
100 |
Q |
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| T |
33455088 |
gaccattgagagtgcatatgtgagtgtgcctgtatgtgtgagagagaaggaattcaagaacccttcaatagctcagaagtgaaaacgatgtttgaaaact |
33455187 |
T |
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| Q |
101 |
cttcatcctttcatactcttcacatctatcaggtacaatattacatgtgtgtcnnnnnnnnnnnnnnnnnnnnntacatgacatatgataacacaaacct |
200 |
Q |
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| T |
33455188 |
cttcatcctttcatactcttcacatctatcaggtacaatattacatgtgtgtctatatatgtatatatatatattacatgacat--gataactcaaacct |
33455285 |
T |
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| Q |
201 |
gaaaatgatgaaagcaaaatttcatgtatttttattttcatatgttttctaattaattttcttgcatcatttacatatgatatgatgttttatgtttaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33455286 |
gaaaatgatgaaagcaaaatttcatgtatttttattttcatatgttttctaat----tttcttgcatcatttacatatgatatgatgttttatgtttaat |
33455381 |
T |
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| Q |
301 |
ttttcagatcgatctttgttattgatcaattcaattcaattcgaaagcaaggaatattgataatggtgaa |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33455382 |
ttttcagatcgatctttgttattgatcaattcaattcaatttgaaagcaaggaatattgataatggtgaa |
33455451 |
T |
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