View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_29 (Length: 393)
Name: NF8919_low_29
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 24 - 383
Target Start/End: Complemental strand, 42216635 - 42216276
Alignment:
| Q |
24 |
aagatactgattacacattataatgtttttgagaaacatatggtagaaagtagttattgtttccactcggatttatgagtgaatggtagtttgagttaga |
123 |
Q |
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| T |
42216635 |
aagatactgattacacattataatgtttttgagaaacatatggtagaaagtagttattgtttccactcggatttatgagtgaatggtagtttgagttaga |
42216536 |
T |
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| Q |
124 |
aatttggatctttgcatttttcggcattgtagtagtgtacttgtgcgactgctctgtatagagtaactcattgattgtacataagataaactagtttgat |
223 |
Q |
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| T |
42216535 |
aatttggatctttgcattttttggcattgtagtagtgtacttgtacgactgctctgtatagagtaactcattgattgtacataagataaactagtttgat |
42216436 |
T |
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| Q |
224 |
agctataaattatgtgttggtttatgtttcttggaattgctaagcttttttcgctactaatgattcctagatattttgattctaagaaacttcttcacgg |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42216435 |
agctataaattatgtgttggtttatgtttcttggaattgctaagctttttttgctactaatgattcctagatattttgattctaagaaacttcttcacgg |
42216336 |
T |
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| Q |
324 |
ggaagcattcatgtgtgatcagtagtttgcgtgagggtttgaaagaattttgggtctctg |
383 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42216335 |
ggaagcattcatgtgtgatcagtagtttgggtgagggtttgaaagaattttgggtctctg |
42216276 |
T |
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