View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_31 (Length: 366)
Name: NF8919_low_31
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 24351586 - 24351295
Alignment:
| Q |
19 |
gatgtaacattattttttaaccgattttggtacaacatcaaaagaaagaccacaaataatacaaccgttttataaaccgatttttgtaacattattcaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
24351586 |
gatgtaacattattttttaaccgattttggtacaacatcaaaagaaagaccacaaataatacaaccgttttttaaaccgatctttgtaacattattcaat |
24351487 |
T |
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| Q |
119 |
caccctattcagatcaacttcccttggtgcagtgatctccataaaaggctgagggagcataactgcattaccattattatcatacgtaattttcggctgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24351486 |
caccctattcagatcaacttcccttggtgcagtgatctccataaaaggctgagggagcataactgcattaccattattatcatacgtaattttcggctgc |
24351387 |
T |
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| Q |
219 |
atataatatggcacaggcacaggaagcatcatattaccaccatgactatgcttaaattcttacaatattccactaaaaagaggttgaaatag |
310 |
Q |
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| T |
24351386 |
atataatttggcacagccacaggaagcatcatattaccaccatgactatgcttaaattcttacaatattccactaaaaagaggttgaaatag |
24351295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 9859582 - 9859816
Alignment:
| Q |
19 |
gatgtaacattattttttaaccgattttggtacaacatcaaaagaaagaccacaaataatacaaccgttttataaaccgatttttgtaacattattcaat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||| ||||||| |
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| T |
9859582 |
gatgtaacattattttttaaccgattttggtacaacatcaaaagaaagaccacagataatacaacca----ataatgacattg-----aca--attcaat |
9859670 |
T |
|
| Q |
119 |
caccctattcagatcaacttcccttggtgcagtgatctccataaaaggctgagggagcataactgcattaccattattatcatacgtaattttcggctgc |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |||||||||||| |
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| T |
9859671 |
caccctgctcagatcaacttcccttggtgcagtgatctccataggaggctgagggagcataactgcattaccattactatcataggtgattttcggctgc |
9859770 |
T |
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| Q |
219 |
atataatatggcacaggcacaggaagcatcatattaccaccatgac |
264 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
9859771 |
atataatttggcacaggcacaggcagcatcatattaccaccatgac |
9859816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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