View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_34 (Length: 346)
Name: NF8919_low_34
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 33676808 - 33676485
Alignment:
| Q |
11 |
agaacctgtggcaaccattttatcaactacaagatttagatgctaaaataatatctttgaaaatttggggcatcttagccatctctcctccacctttagc |
110 |
Q |
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| T |
33676808 |
agaacctatggcaaccattttatcaactacaagatttagatgctaaaataatatctttgaaaatttggggcatcttagctatctctcctccacctttagc |
33676709 |
T |
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| Q |
111 |
cctcacacaacaacattcactcattccataatcaattcaacattcaaaagcatattccatgatactgacaaagtatcaagtatcaagataccccgagttt |
210 |
Q |
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| T |
33676708 |
cctcacacaacaacattcactcattccataatcaattcaacattcaaaagcatattccatgatactgacaaagtatcaagtatcaagataccccgagttt |
33676609 |
T |
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| Q |
211 |
a--atgatataatgat--nnnnnnnnnntgatataatgatcatcaacattttaacacattaacatctactagctactaggtgaatttcttggtcatcact |
306 |
Q |
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| T |
33676608 |
aatatgatataatgataaaaaaaaaaaattatataatgatcatcaacattttaacacattaacatctactagctactaggtgcatttcttggtcatcact |
33676509 |
T |
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| Q |
307 |
tcatttttacaagttccatatatt |
330 |
Q |
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|||| | ||||||||||||||||| |
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| T |
33676508 |
tcatatctacaagttccatatatt |
33676485 |
T |
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