View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_35 (Length: 343)
Name: NF8919_low_35
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 29 - 327
Target Start/End: Complemental strand, 52875962 - 52875664
Alignment:
| Q |
29 |
aaaaaatgtatacaactataaacagactcaagaacatagtgaagtttctcattccctatgtatggaaaacaataattcccatgcaactagaatgaaaaaa |
128 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52875962 |
aaaaaacgtatacaactataaacagactcaagaacatagtgaagtttctcattccctatgtatggaaaacaataattcccatgcaactagaatgaaaaaa |
52875863 |
T |
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| Q |
129 |
taatcagatttgtataatataagtaaacttggaagggttgattgtctgcctgaaagtttggttgatctctaagggccatgttcaaacttgaggaagagaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52875862 |
taatcagatttgtataatataagtaaacttggaagggttgattgtctgcctgaaagtttggttgatctctaagggccatgttcaaacttgaggaagagaa |
52875763 |
T |
|
| Q |
229 |
taatccaaaactttatcgctttctattaatcttgaatgtctctcaccattgtccttctcatcaatcagagatgacaaatatttgtgtacaatgatttgt |
327 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52875762 |
taatccaaaactttttcgctttctattaatcttgaatgtctctcaccattgtcattctcatcaatcagagatgacaaatatttgtgtacaatgatttgt |
52875664 |
T |
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