View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_36 (Length: 335)
Name: NF8919_low_36
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 27480623 - 27480798
Alignment:
| Q |
3 |
cagagaagcttaacaaatgcagaaatagaaaatctgatagtcttagagacaacctgatacataaataaaacacacattgcgtgataaaaataccttagaa |
102 |
Q |
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| T |
27480623 |
cagagaagcttaacaaatgcagaaatagaaaatctgatagtcttagagacaacctgatacataaataaaacacacattgcgtgataaaaataccttagaa |
27480722 |
T |
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| Q |
103 |
tttattaaaacaggagtggcatgcttctcctgaaaccatttcaacatataaaaccgcctattcatctgcatctaac |
178 |
Q |
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| T |
27480723 |
tttattaaaacaggagtggcatgcttctcctgaaaccatttcagcatataaaaccgcctcttcatctgcatctaac |
27480798 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 27480853 - 27480921
Alignment:
| Q |
233 |
ggttcaaatactaaccatttgagataggagtgtaccaaaccatctactagttctctgttattttatatat |
302 |
Q |
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| T |
27480853 |
ggttcaaatactaaccatttgagataggagagta-caaaccatctactagttctcttttattttttatat |
27480921 |
T |
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