View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8919_low_38 (Length: 322)
Name: NF8919_low_38
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_38 |
 | |
|
| [»] scaffold1720 (1 HSPs) |
| | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0056 (1 HSPs) |
| | |
|
| [»] scaffold0142 (1 HSPs) |
| | |
|
| [»] scaffold2063 (1 HSPs) |
| | |
|
| [»] scaffold0656 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 310
Target Start/End: Original strand, 24986850 - 24987161
Alignment:
| Q |
2 |
caagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacc |
101 |
Q |
| |
|
|||||||| ||| |||||| ||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||| |||||||||||| || | ||| |
|
|
| T |
24986850 |
caagcaatgaaagatatgtccccaagacatatacgttcgatgtaaccaagtgcgacgagatttatgatctcttagttgttgatggtcaagtggtagaacc |
24986949 |
T |
|
| Q |
102 |
taaggatttgaaaatcccaccactagagc---agcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctctt |
198 |
Q |
| |
|
||||||| | |||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
24986950 |
taaggatgtaaaaatcccaccactagttgttgatggtcataaaagaggtttttgtaaataccataacttcttaggacataacacctctcaatgttctatt |
24987049 |
T |
|
| Q |
199 |
ttcagggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatg |
298 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24987050 |
ttcagggatttggttcagaagggtcttagtgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatg |
24987149 |
T |
|
| Q |
299 |
cgagtatgatgt |
310 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24987150 |
cgagtatgatgt |
24987161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 25565849 - 25566039
Alignment:
| Q |
3 |
aagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacct |
102 |
Q |
| |
|
||||||| ||| |||||| ||||| |||||||| ||||| ||||| ||||| || ||||||||||||||||||||| | |||||||||| || ||| || |
|
|
| T |
25565849 |
aagcaatgaaagatatgtccccaagacatatacattcgacgtaaccaaatgtcaccagatttatgatctcttagttgtttatggtcaagtggtagcagct |
25565948 |
T |
|
| Q |
103 |
aaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgtt |
193 |
Q |
| |
|
|||||| | ||||||||||||||||| || ||| | ||||||||||||||||| || | ||||||||| |||||||||||||||||||||| |
|
|
| T |
25565949 |
aaggatgtaaaaatcccaccactagaacaacgtcataaaagaggtttttgtaagtatcgtaacttcttcggacataacacctctcgatgtt |
25566039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 25566057 - 25566123
Alignment:
| Q |
244 |
tttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatgcgagtatgatgt |
310 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| || |||||||| ||||||||||||||||| |
|
|
| T |
25566057 |
tttggaaacaagccaaagaatcaaatgcaagtaaactctgatcccttgaaagatgcgagtatgatgt |
25566123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 17163711 - 17163857
Alignment:
| Q |
118 |
ccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttttcagggttttggttcaga |
217 |
Q |
| |
|
|||||||||||||| || || || ||||||||| |||||| ||||| || | |||||| | ||||| | ||| ||||| ||||| ||||||||||| |
|
|
| T |
17163711 |
ccaccactagagcaacgcaataagagaggttttcgtaaatttcataattttctgggacattaaacctcacagtgtgttctttacagggatttggttcaga |
17163810 |
T |
|
| Q |
218 |
agggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcct |
264 |
Q |
| |
|
| | | |||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
17163811 |
gagctttgaatgaaggcagactgaaatttggaaacaaatcaaagcct |
17163857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 24900766 - 24900457
Alignment:
| Q |
1 |
ccaagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcac |
100 |
Q |
| |
|
||||||||| ||| ||||||||| ||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
24900766 |
ccaagcaatgaaagatatgttccaaaaacatatacattcgacgtaatcaaatgcgacaagatttatgatctcttagttgctgatggtcaagtggtagcac |
24900667 |
T |
|
| Q |
101 |
ctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctctttt |
200 |
Q |
| |
|
|||||||| | |||| |||||||||||| || ||| ||||||||| |||||||||||||||||| || | ||||||||||||| ||||||||| ||| | |
|
|
| T |
24900666 |
ctaaggatgtaaaaaccccaccactagaacaacgtcagaaaagagatttttgtaaataccataattttatgggacataacacctatcgatgttcccttct |
24900567 |
T |
|
| Q |
201 |
cagggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatgcg |
300 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| || ||| |||| ||||||| |
|
|
| T |
24900566 |
cagggatttggttcagaagggtctcaatgaaggcagattgaaatttggaaaaaagccaaagcctcaaatgcaattagactctgatcctttgaaagatgcg |
24900467 |
T |
|
| Q |
301 |
agtatgatgt |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
24900466 |
agtatgatgt |
24900457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 22261897 - 22261807
Alignment:
| Q |
2 |
caagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagt |
92 |
Q |
| |
|
|||||||| ||| |||||| ||||| |||||||| ||||| ||| | ||||| ||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
22261897 |
caagcaatgaaagatatgtccccaagacatatacattcgacgtatccaaatgtgacgagaattatgatctcttagttgctgatggacaagt |
22261807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 21331956 - 21331907
Alignment:
| Q |
226 |
aatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagt |
275 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
21331956 |
aatgaaggcatgatgaaatttggagacaagtcaaagcctcaaatgcaagt |
21331907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 20192090 - 20192287
Alignment:
| Q |
1 |
ccaagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20192090 |
ccaagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcac |
20192189 |
T |
|
| Q |
101 |
ctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctctt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||||| |
|
|
| T |
20192190 |
ctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataattatttgggacataacacctcacgatgttctctt |
20192287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 22143901 - 22143704
Alignment:
| Q |
1 |
ccaagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22143901 |
ccaagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcac |
22143802 |
T |
|
| Q |
101 |
ctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctctt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||||| |
|
|
| T |
22143801 |
ctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataattatttgggacataacacctcacgatgttctctt |
22143704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 14635448 - 14635321
Alignment:
| Q |
37 |
ttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatcccaccactagagcagcgta |
136 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||||||||||||| |||||||||||| | || || ||| | ||| ||||||| ||||||| | || |||| |
|
|
| T |
14635448 |
ttcgatgtaagcaaatgcgatgagatttttgatctcttagttgttgatggtcaagtggcggtacttaacggtttaaaaatccaaccactaaaccaacgta |
14635349 |
T |
|
| Q |
137 |
agaaaagaggtttttgtaaataccataa |
164 |
Q |
| |
|
| || | ||| ||||||||||| ||||| |
|
|
| T |
14635348 |
aaaagatagggttttgtaaatatcataa |
14635321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 22804966 - 22804657
Alignment:
| Q |
1 |
ccaagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcac |
100 |
Q |
| |
|
||||||||| ||| |||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
22804966 |
ccaagcaatgaaagatatgttcccaagacatatacgttcgacgtaaccaaatgcgacgagatttatgatctcttagttgctgatggtcaagtggtagcac |
22804867 |
T |
|
| Q |
101 |
ctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctctttt |
200 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| |||||||||| |||||||||||||||||| || | || |||||||||||||| ||||||| ||||| |
|
|
| T |
22804866 |
ctaaggatttaaaaatcccactactggagcaacgtaagaaaataggtttttgtaaataccacaattatttgggacataacacctcatgatgttccctttt |
22804767 |
T |
|
| Q |
201 |
cagggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatgcg |
300 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||||||||||||| ||| || |||| ||||||||||||||||||||||||| || ||| |||| ||||| | |
|
|
| T |
22804766 |
cagggatttggttcagaaaggtctcaatgaaggcaaattgaagtttagagacaaaccaaagcctcaaatgcaagtagactctgatcctttgaaagatgag |
22804667 |
T |
|
| Q |
301 |
agtatgatgt |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
22804666 |
agtatgatgt |
22804657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 20061861 - 20062004
Alignment:
| Q |
21 |
tcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatccca |
120 |
Q |
| |
|
||||||||| |||| ||| ||||||| |||||||| ||||||| | |||||||||||||||||||| |||| ||| |||||| ||| ||||||||| |
|
|
| T |
20061861 |
tcccaaaacttataggttctatgtaaccaaatgcgatgagattttttatctcttagttgctgatggttaagtggtgctacctaacagtttaaaaatccca |
20061960 |
T |
|
| Q |
121 |
ccactagagcagcgtaagaaaagaggtttttgtaaataccataa |
164 |
Q |
| |
|
|||||||| || |||| || ||||| | ||||||||| ||||| |
|
|
| T |
20061961 |
ccactagaacaatgtaaaaagagagggtgttgtaaatatcataa |
20062004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 21380491 - 21380342
Alignment:
| Q |
15 |
atatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaa |
114 |
Q |
| |
|
||||||||| ||||| | || || ||||| | |||||| || ||||||| | |||||||||||| | |||||||||| || | ||||| | ||| ||| |
|
|
| T |
21380491 |
atatgttcctaaaaccttcacgtttgatgtgattaaatgtgatgagattttttatctcttagttgttaatggtcaagtggtagtgcctaatggtttaaaa |
21380392 |
T |
|
| Q |
115 |
atcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataa |
164 |
Q |
| |
|
|| |||||||||||||| ||||| ||||||| |||||||||||| ||||| |
|
|
| T |
21380391 |
attccaccactagagcaacgtaaaaaaagagatttttgtaaatatcataa |
21380342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 28738941 - 28739012
Alignment:
| Q |
21 |
tcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagt |
92 |
Q |
| |
|
||||||||| || || | ||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28738941 |
tcccaaaacttacacgtccgatgtaaccaaatgcgatgagatttttgatctcttagttgctgatggtcaagt |
28739012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 179
Target Start/End: Original strand, 19220388 - 19220530
Alignment:
| Q |
37 |
ttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatcccaccactagagcagcgta |
136 |
Q |
| |
|
||||||||||| ||||| || || |||| | |||||||||||| ||||||||||| | || |||||| | || ||||| |||||||||||||| | || |
|
|
| T |
19220388 |
ttcgatgtaaccaaatgtgatgatattttttatctcttagttgttgatggtcaagcggcggtacctaatggttgaaaaattccaccactagagcaacata |
19220487 |
T |
|
| Q |
137 |
agaaaagaggtttttgtaaataccataacttcttaggacataa |
179 |
Q |
| |
|
| || ||||| ||||||||||| ||||| || || |||||||| |
|
|
| T |
19220488 |
aaaagagagggttttgtaaatatcataattttttgggacataa |
19220530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 10233920 - 10233847
Alignment:
| Q |
15 |
atatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtc |
88 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||| ||||| || ||||||| | |||| |||||||||||||||| |
|
|
| T |
10233920 |
atatgttcctaaaacctatacatttgatgtaaccaaatgtgatgagattttttatcttttagttgctgatggtc |
10233847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 310
Target Start/End: Original strand, 7867791 - 7868099
Alignment:
| Q |
2 |
caagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacc |
101 |
Q |
| |
|
|||||||| ||| |||||| ||||| | || ||| |||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| || || || |
|
|
| T |
7867791 |
caagcaatgaaagatatgtccccaagagatttacattcggcgtaaccaaatgcgacgagatttatgatctcttagttgctaatggtcaagtggtagctcc |
7867890 |
T |
|
| Q |
102 |
taaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttttc |
201 |
Q |
| |
|
||||||| | ||||||||||||||||| || ||| |||||||||||||||||||||| |||||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
7867891 |
taaggatgtaaaaatcccaccactagaacaacgtcagaaaagaggtttttgtaaatatcataactttttgggacataacacctctcgatgtttccttttc |
7867990 |
T |
|
| Q |
202 |
agggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatgcga |
301 |
Q |
| |
|
| || ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||| |
|
|
| T |
7867991 |
aaggatttggttcagaagggtcttaatgaaggcagactgaagtttggaaacaagccaaagcctcaaatgcaagtagactttgatccattgaaagatgcga |
7868090 |
T |
|
| Q |
302 |
gtatgatgt |
310 |
Q |
| |
|
||||||||| |
|
|
| T |
7868091 |
gtatgatgt |
7868099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 12812783 - 12813093
Alignment:
| Q |
1 |
ccaagcaatcaaatatatgttcccaaaacatatactttcgatg-taactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggca |
99 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||| ||||||||| || ||| |
|
|
| T |
12812783 |
ccaagcaatgaaagatatgtttccaaaacatatacgttcgacggtaaccaaatgcgacgagatttatgatctcttagttgccaatggtcaagcggtagca |
12812882 |
T |
|
| Q |
100 |
cctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttt |
199 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||| || |||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||| |||| |
|
|
| T |
12812883 |
cctaaagatttaaaaatcccaccacttgagcaatgtcagaaaagaggtttttgtaaatatcataattacttaggacataaaacctcacgatgtttccttt |
12812982 |
T |
|
| Q |
200 |
tcagggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatgc |
299 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||||||| |||||| |||||| |||| ||||||||||||||| ||||||||| || ||| |||| |||||| |
|
|
| T |
12812983 |
tcagggatttggttcagaaaggtctcaatgaaggcagattgaagtttggagacaaaccaaagcctcaaatgtaagtagactctgatcctttgaaagatgc |
12813082 |
T |
|
| Q |
300 |
gagtatgatgt |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
12813083 |
aagtatgatgt |
12813093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 16923391 - 16923084
Alignment:
| Q |
2 |
caagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacc |
101 |
Q |
| |
|
|||||||| ||| |||||| || || |||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| || | || |
|
|
| T |
16923391 |
caagcaatgaaagatatgtccctaagacatataccttcgacgtaaccaaatgcgacgagatttataatctcttagttgctgatggtcaagtcgtcgttcc |
16923292 |
T |
|
| Q |
102 |
taaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttttc |
201 |
Q |
| |
|
||||||| | ||||||||||||||||| | ||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
16923291 |
taaggatgtaaaaatcccaccactagaaaaacgtcagaaaagaggtttttgtaaatatcataacttcttgggacataacacctctcgatgttaccttttt |
16923192 |
T |
|
| Q |
202 |
agggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatgcga |
301 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
16923191 |
agggatttggttcagaa-ggtcttaatgaaggcagactgaagtttggaaacaagccaaagtttcaaatgcaagtagactctgatcccttgaaagatgcga |
16923093 |
T |
|
| Q |
302 |
gtatgatgt |
310 |
Q |
| |
|
| ||||||| |
|
|
| T |
16923092 |
gcatgatgt |
16923084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 4771525 - 4771425
Alignment:
| Q |
37 |
ttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatcccaccactagagcagcgta |
136 |
Q |
| |
|
||||||||||| ||||| || ||||||| ||||||| | ||||||||||||| | | | || | |||| | ||| ||||| |||||||||||||| |||| |
|
|
| T |
4771525 |
ttcgatgtaaccaaatgggatgagatttttgatctcatggttgctgatggtcgaatggcggtatctaatggtttaaaaattccaccactagagcaacgta |
4771426 |
T |
|
| Q |
137 |
a |
137 |
Q |
| |
|
| |
|
|
| T |
4771425 |
a |
4771425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 21311464 - 21311719
Alignment:
| Q |
2 |
caagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacc |
101 |
Q |
| |
|
|||||||| ||| |||||| ||||| |||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
21311464 |
caagcaatgaaagatatgtccccaagacatatacgttcaacgtaaccaaatgcgacgagatttatgatctcttagttgctgatggtcaagtggtagcacc |
21311563 |
T |
|
| Q |
102 |
taaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttttc |
201 |
Q |
| |
|
||||||| | ||||| ||||||||||| || || |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
21311564 |
taaggatgt-aaaattccaccactagaacaatgtcagaaaagaggtttttgtaaatatcataacttcttgggacataacacctctcgatgttcccttttc |
21311662 |
T |
|
| Q |
202 |
agggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagcca |
258 |
Q |
| |
|
| || ||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
21311663 |
aaggatttggttcataagggtcataatgaaggcaggttgaaatttggaaacaagcca |
21311719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 13386432 - 13386741
Alignment:
| Q |
1 |
ccaagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcac |
100 |
Q |
| |
|
||||| ||| ||| ||||||||| ||||||||||| ||||| ||||| |||||| || ||||||||||||||||||||||||||||||||| | | || |
|
|
| T |
13386432 |
ccaagtaatgaaagatatgttccaaaaacatataccttcgacgtaaccaaatgctacaagatttatgatctcttagttgctgatggtcaaggggaagtac |
13386531 |
T |
|
| Q |
101 |
ctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctctttt |
200 |
Q |
| |
|
| |||| ||||||||||||||||||||| || ||| ||||||||| |||||||||||| ||||| || || |||||||||||||| | |||||| ||||| |
|
|
| T |
13386532 |
ccaagg-tttgaaaatcccaccactagaacaacgtcagaaaagagatttttgtaaatatcataattttttgggacataacacctcacaatgttccctttt |
13386630 |
T |
|
| Q |
201 |
cagggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagta-gactatggtcccttgagagatgc |
299 |
Q |
| |
|
|| | |||||||||||||||||| |||||||| | ||| || |||||||||||||| |||||||||||||||||| |||| || ||| |||| ||||| |
|
|
| T |
13386631 |
caaagatttggttcagaagggtctcaatgaaggaagatttaagtttggaaacaagccgaagcctcaaatgcaagtatgactttgatcctttgaaggatgc |
13386730 |
T |
|
| Q |
300 |
gagtatgatgt |
310 |
Q |
| |
|
||| ||||||| |
|
|
| T |
13386731 |
gagcatgatgt |
13386741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 22611458 - 22611585
Alignment:
| Q |
58 |
gagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaat |
157 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| | || ||||| | || ||||| |||||||||||||||||||| || | || |||||||| | |
|
|
| T |
22611458 |
gagatttttgatctcttagttgctgatggtcaagtggcggtacctattggattaaaaattccaccactagagcagcgtaaaaagatggggttttgtaagt |
22611557 |
T |
|
| Q |
158 |
accataacttcttaggacataacacctc |
185 |
Q |
| |
|
| |||||| | ||||||||||| ||||| |
|
|
| T |
22611558 |
atcataacgttttaggacataagacctc |
22611585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 21306850 - 21306956
Alignment:
| Q |
58 |
gagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaat |
157 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| |||| |||||| | ||| ||||||| |||| ||||||| | ||| || ||||| |||||||||| |
|
|
| T |
21306850 |
gagatttttgatctcgtagttgctgatggtcaagtggtggtacctaacggtttaaaaatcctaccattagagcaacataaaaagagagggttttgtaaat |
21306949 |
T |
|
| Q |
158 |
accataa |
164 |
Q |
| |
|
| ||||| |
|
|
| T |
21306950 |
atcataa |
21306956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 18217209 - 18217261
Alignment:
| Q |
258 |
aaagcctcaaatgcaagtagactatggtcccttgagagatgcgagtatgatgt |
310 |
Q |
| |
|
||||||| | ||||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
18217209 |
aaagccttagatgcaagtagactccgatcccttgaaagatgcgagtatgatgt |
18217261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 49 - 262
Target Start/End: Complemental strand, 17139229 - 17139016
Alignment:
| Q |
49 |
aaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||||||||||||||| || ||| |||||| ||||| |
|
|
| T |
17139229 |
aaatgcgacgagatttatgatctcttagttgctgatggtcaagtggtagcacctaaggatgtaaaaatcccaccactagaacaacgtcagaaaataggtt |
17139130 |
T |
|
| Q |
149 |
tttgtaaataccataacttcttaggacataacacctctcgatgttctcttttcagggttttggttcagaagggtcttaatgaaggcaaattgaaatttgg |
248 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || ||||||||| |||||||||| ||||||||||||||||||||||||||||| | |||| ||||| |
|
|
| T |
17139129 |
tttgtaaataccataacttcttgggacataacgactatcgatgttcccttttcagggatttggttcagaagggtcttaatgaaggcagactgaagtttgg |
17139030 |
T |
|
| Q |
249 |
aaacaagccaaagc |
262 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
17139029 |
aaataagccaaagc |
17139016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 14951587 - 14951277
Alignment:
| Q |
1 |
ccaagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcac |
100 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||||||||||||||||||| || ||| |
|
|
| T |
14951587 |
ccaatcaatgaaagatatgttcccaaaacatatacgttcgacgtaaccaaatggaatgagatatatgatctcttagttgctgatggtcaagtggtaacac |
14951488 |
T |
|
| Q |
101 |
ctaaggatttgaaaa-tcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttt |
199 |
Q |
| |
|
|||||||||| |||| ||||||||||| || ||| ||||||||||||||||||||| ||||| | || |||||||| ||| | |||||||| |||| |
|
|
| T |
14951487 |
ctaaggattttaaaaatcccaccactaagtcaacgttggaaaagaggtttttgtaaatatcataattatttgggacataaaaccccacgatgttcccttt |
14951388 |
T |
|
| Q |
200 |
tcagggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatgc |
299 |
Q |
| |
|
| |||| ||||||||| || |||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||||||| || ||| || | |||||| |
|
|
| T |
14951387 |
ttagggatttggttcataaaggtcttaatgaaggcagattgaaatttggagataagccaaagccacaaatgcaagtagactctgatccattaaaagatgc |
14951288 |
T |
|
| Q |
300 |
gagtatgatgt |
310 |
Q |
| |
|
||||||||||| |
|
|
| T |
14951287 |
gagtatgatgt |
14951277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 15379180 - 15378870
Alignment:
| Q |
1 |
ccaagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcac |
100 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||||||||||||||||||| || ||| |
|
|
| T |
15379180 |
ccaatcaatgaaagatatgttcccaaaacatatacgttcgacgtaaccaaatggaatgagatatatgatctcttagttgctgatggtcaagtggtaacac |
15379081 |
T |
|
| Q |
101 |
ctaaggatttgaaaa-tcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttt |
199 |
Q |
| |
|
|||||||||| |||| ||||||||||| || ||| ||||||||||||||||||||| ||||| | || |||||||| ||| | |||||||| |||| |
|
|
| T |
15379080 |
ctaaggattttaaaaatcccaccactaagtcaacgttggaaaagaggtttttgtaaatatcataattatttgggacataaaaccccacgatgttcccttt |
15378981 |
T |
|
| Q |
200 |
tcagggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatgc |
299 |
Q |
| |
|
| |||| ||||||||| || |||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||||||| || ||| || | |||||| |
|
|
| T |
15378980 |
ttagggatttggttcataaaggtcttaatgaaggcagattgaaatttggagataagccaaagccacaaatgcaagtagactctgatccattaaaagatgc |
15378881 |
T |
|
| Q |
300 |
gagtatgatgt |
310 |
Q |
| |
|
||||||||||| |
|
|
| T |
15378880 |
gagtatgatgt |
15378870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 16054303 - 16054056
Alignment:
| Q |
15 |
atatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaa |
114 |
Q |
| |
|
||||||||| ||||| |||| || |||||||| ||||| || ||||||| | |||||||||||| |||||||||||| || | ||||||| || ||| |
|
|
| T |
16054303 |
atatgttcctaaaacctatatgtttgatgtaaccaaatgtgatgagattttttatctcttagttgttgatggtcaagtggtagtgcctaagggcttaaaa |
16054204 |
T |
|
| Q |
115 |
atcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttttcagggttttggttc |
214 |
Q |
| |
|
|| ||||||||||| ||||| || |||||||||||||| || | |||||| || |||||||| |||||| |||| ||||||||||| |||||||| |
|
|
| T |
16054203 |
at---tccactagagcaacgtaaaaagagaggtttttgtaagtatcctaacttttttggacataaaacctcttaatgtgttcttttcagggatttggttc |
16054107 |
T |
|
| Q |
215 |
agaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctc |
265 |
Q |
| |
|
| || | ||| |||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
16054106 |
aaaaagctctaaatgaaggcaggctgaaatttggagacaaatcaaagcctc |
16054056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 16905079 - 16904945
Alignment:
| Q |
21 |
tcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatccca |
120 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| || ||||||| |||| |||||||||||||||||||| | | || |||||| | ||| ||||| | | |
|
|
| T |
16905079 |
tcccaaaacatacacattcgatgtaaccaaatgtgatgagatttttgatatcttagttgctgatggtcaattggcggtacctaatggtttaaaaattcta |
16904980 |
T |
|
| Q |
121 |
ccactagagcagcgtaagaaaagaggtttttgtaa |
155 |
Q |
| |
|
||||||||||| | ||| || |||||||||||||| |
|
|
| T |
16904979 |
ccactagagcaacataaaaagagaggtttttgtaa |
16904945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 14989139 - 14989276
Alignment:
| Q |
21 |
tcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatccca |
120 |
Q |
| |
|
||||||||| || || |||||||||| |||||||| ||||||| | |||||||||||| |||||||||||| | | |||||| | ||| ||||| ||| |
|
|
| T |
14989139 |
tcccaaaacttacacgttcgatgtaatcaaatgcgatgagattttttatctcttagttgttgatggtcaagtggcagtacctaacggtttaaaaattcca |
14989238 |
T |
|
| Q |
121 |
ccactagagcagcgtaagaaaagaggtttttgtaaata |
158 |
Q |
| |
|
||||| ||||| | ||| || ||||| ||||||||||| |
|
|
| T |
14989239 |
ccactggagcaacttaaaaagagagggttttgtaaata |
14989276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 15418750 - 15418887
Alignment:
| Q |
21 |
tcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatccca |
120 |
Q |
| |
|
||||||||| || || |||||||||| |||||||| ||||||| | |||||||||||| |||||||||||| | | |||||| | ||| ||||| ||| |
|
|
| T |
15418750 |
tcccaaaacttacacgttcgatgtaatcaaatgcgatgagattttttatctcttagttgttgatggtcaagtggcagtacctaacggtttaaaaattcca |
15418849 |
T |
|
| Q |
121 |
ccactagagcagcgtaagaaaagaggtttttgtaaata |
158 |
Q |
| |
|
||||| ||||| | ||| || ||||| ||||||||||| |
|
|
| T |
15418850 |
ccactggagcaacttaaaaagagagggttttgtaaata |
15418887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 7950202 - 7950279
Alignment:
| Q |
15 |
atatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagt |
92 |
Q |
| |
|
||||||||| ||||| ||||| | |||||||| |||| || ||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
7950202 |
atatgttcctaaaacctatacagttgatgtaacaaaatttgatgagatttttgatcccgtagttgctgatggtcaagt |
7950279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 11978070 - 11978009
Alignment:
| Q |
25 |
aaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatgg |
86 |
Q |
| |
|
|||||||||||||| |||||| ||||||| || ||||||| |||||| ||||| ||||||| |
|
|
| T |
11978070 |
aaaacatatacttttgatgtatctaaatgtgaagagatttttgatcttctagttactgatgg |
11978009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1720 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold1720
Description:
Target: scaffold1720; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 49 - 310
Target Start/End: Original strand, 116 - 377
Alignment:
| Q |
49 |
aaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtt |
148 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| | || |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
116 |
aaatgcgacgagatatatgatctcttagttgctgatggtcaaatggtagcacttaaggatttgaatatcccgccactagagcaacgtaagaaaagaggtt |
215 |
T |
|
| Q |
149 |
tttgtaaataccataacttcttaggacataacacctctcgatgttctcttttcagggttttggttcagaagggtcttaatgaaggcaaattgaaatttgg |
248 |
Q |
| |
|
|||||||||||||||| | || ||| ||||||||||||||||| | || ||||||| ||||||||| || |||| |||||||||| |||| ||||| |
|
|
| T |
216 |
tttgtaaataccataattatttgggatataacacctctcgatgtcccctcttcagggatttggttcataaatgtctcaatgaaggcatgctgaagtttgg |
315 |
T |
|
| Q |
249 |
aaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatgcgagtatgatgt |
310 |
Q |
| |
|
| |||||||||||||||||||||||||| ||| || ||| |||| ||||| ||||||||||| |
|
|
| T |
316 |
agacaagccaaagcctcaaatgcaagtaaactctgatcctttgaaagatgtgagtatgatgt |
377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 3 - 280
Target Start/End: Original strand, 79077 - 79354
Alignment:
| Q |
3 |
aagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacct |
102 |
Q |
| |
|
||||||| ||| |||||| ||||| |||||||| ||||| |||| ||||| ||| ||||||||||||| ||||||| |||||||||||| || |||||| |
|
|
| T |
79077 |
aagcaatgaaagatatgtccccaagacatatacattcgacgtaagaaaatgggacaagatttatgatcttttagttgttgatggtcaagtggtagcacct |
79176 |
T |
|
| Q |
103 |
aaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttttca |
202 |
Q |
| |
|
|||||| | |||||||||| |||||| || || |||||| | |||||||||| || ||||| ||||| ||||||||||||||||||||||| ||| || |
|
|
| T |
79177 |
aaggatgtaaaaatcccacaactagaacaacgccagaaaataagtttttgtaagtatcataaattcttgggacataacacctctcgatgttccttttcca |
79276 |
T |
|
| Q |
203 |
gggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagtagact |
280 |
Q |
| |
|
||| || | ||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79277 |
gggattagcttcagaaggctcttaatgaaggcagattgaagtttggaaacaagccaaagcctcaaatgcaagtagact |
79354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 3 - 310
Target Start/End: Complemental strand, 36113 - 35806
Alignment:
| Q |
3 |
aagcaatcaaatatatgttcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacct |
102 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
36113 |
aagcaatgaaagatatgatcccaaaacatatacgttcgacgtaaccaaatacgacgagatttatgatctcttagttactgatggtcaagttgtagcacct |
36014 |
T |
|
| Q |
103 |
aaggatttgaaaatcccaccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttttca |
202 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||||| ||| |||| ||||| | |
|
|
| T |
36013 |
aaggatttaaaaatcccaccactagagcaataaaagaaaagaggtttttgtaaataccataattatttgggacataacacctcacgaagttcccttttta |
35914 |
T |
|
| Q |
203 |
gggttttggttcagaagggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatgcgag |
302 |
Q |
| |
|
|| | || ||||||| ||||| |||||| | | | || |||||| |||||||||||||||||||| ||||||||| || ||| || | |||| ||| |
|
|
| T |
35913 |
aggatctgattcagaaaggtctcaatgaatgtaggcttaagtttggagacaagccaaagcctcaaatgaaagtagactctgatcctttaaacgatgtgag |
35814 |
T |
|
| Q |
303 |
tatgatgt |
310 |
Q |
| |
|
|||||||| |
|
|
| T |
35813 |
tatgatgt |
35806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 135 - 310
Target Start/End: Original strand, 14429 - 14604
Alignment:
| Q |
135 |
taagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttttcagggttttggttcagaagggtcttaatgaaggc |
234 |
Q |
| |
|
|||||||||||||||| | ||||||||||| | || |||||||||||||| ||||||| |||||||| | |||||||||||| ||||| ||||||||| |
|
|
| T |
14429 |
taagaaaagaggttttggcaaataccataattatttgggacataacacctcatgatgttcccttttcagagatttggttcagaaaggtctcaatgaaggc |
14528 |
T |
|
| Q |
235 |
aaattgaaatttggaaacaagccaaagcctcaaatgcaagtagactatggtcccttgagagatgcgagtatgatgt |
310 |
Q |
| |
|
| |||||| |||||| |||||||||| ||||||||||||| ||| | | ||| |||| | ||||||||||||||| |
|
|
| T |
14529 |
atattgaagtttggagacaagccaaaacctcaaatgcaaggagattctaatcctttgaaatatgcgagtatgatgt |
14604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 18635 - 18379
Alignment:
| Q |
21 |
tcccaaaacatatactttcgatgtaactaaatgcgacgagatttatg--atctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatcc |
118 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||| ||||||| | |||||||| ||| |||||||||||| |||| |||| | | ||||||||||| |
|
|
| T |
18635 |
tcccaaaacatatatgttcgccgtaaccaaatgcgatgagattttttttatctcttaattgttgatggtcaagtggtggtaccttatggtttgaaaatcc |
18536 |
T |
|
| Q |
119 |
caccactagagcagcgtaagaaaagaggtttttgtaaataccataacttcttaggacataacacctctcgatgttctcttttcagggttttggttcagaa |
218 |
Q |
| |
|
|||| |||||||| ||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||| | ||| ||||| |||| |||||| || || |
|
|
| T |
18535 |
aaccattagagcagtgtaagaagagagggttttgtaaatatcataatttcttaggacataaaacctcacattgtgtactttttagggatttggtgcaaaa |
18436 |
T |
|
| Q |
219 |
gggtcttaatgaaggcaaattgaaatttggaaacaagccaaagcctcaaatgcaagt |
275 |
Q |
| |
|
| ||| |||||||||| | |||| |||||| | || ||| |||||||||||||| |
|
|
| T |
18435 |
agctctgaatgaaggcagactgaagtttggagataaaagaaaacctcaaatgcaagt |
18379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2063 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold2063
Description:
Target: scaffold2063; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 426 - 569
Alignment:
| Q |
21 |
tcccaaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatggtcaagtagtggcacctaaggatttgaaaatccca |
120 |
Q |
| |
|
||||||||| || || ||| ||||||| |||||||| || ||| | |||||||||||||| ||||||| | | || |||||| | | | |||||||| |
|
|
| T |
426 |
tcccaaaacttacacgttcaatgtaaccaaatgcgatgattttttttatctcttagttgctagtggtcaattggcggtacctaacggtctaaaaatccct |
525 |
T |
|
| Q |
121 |
ccactagagcagcgtaagaaaagaggtttttgtaaataccataa |
164 |
Q |
| |
|
|||||||| || ||||| || | ||| ||||||||||| ||||| |
|
|
| T |
526 |
ccactagaacaacgtaaaaagatagggttttgtaaatatcataa |
569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0656 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0656
Description:
Target: scaffold0656; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 4086 - 4147
Alignment:
| Q |
25 |
aaaacatatactttcgatgtaactaaatgcgacgagatttatgatctcttagttgctgatgg |
86 |
Q |
| |
|
|||||||||||||| |||||| ||||||| || ||||||| |||||| ||||| ||||||| |
|
|
| T |
4086 |
aaaacatatacttttgatgtatctaaatgtgaagagatttttgatcttctagttactgatgg |
4147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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