View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_39 (Length: 314)
Name: NF8919_low_39
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 53 - 299
Target Start/End: Original strand, 29605786 - 29606032
Alignment:
| Q |
53 |
agcctattgtggcagcaactcctgttagtaatacaaacaaacaacctgcagcaacttctcctacttctaacaaacccataaccacagtcacggcagctgc |
152 |
Q |
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| T |
29605786 |
agcctattgtggcagcaactcctgctagtaatacaaacaaacaacctgcagcaacttctcctacttctaacaaacccataaccacagtcacggcagctgc |
29605885 |
T |
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| Q |
153 |
accatcgaagttgccaacaacgaatccatctgcaccttccacattgcccctagacaaacaaaagcctattgtagcagcaactcctgctagtagtacaaag |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29605886 |
accatcgaagttgccaacaacgaatccatctgcaccttccacattgcccctagacaaacaaaagcctattgtagcagcaactcctgctagtagtacaaag |
29605985 |
T |
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| Q |
253 |
caaccaccagcagcaacctctcctatttctaacaaaccctcgaccac |
299 |
Q |
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| T |
29605986 |
caaccaccagcagcaacctctcctatttctaacaaaccctcgaccac |
29606032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 29605626 - 29605777
Alignment:
| Q |
100 |
gcagcaacttctcctacttctaacaaacccataaccacagtcacggcagctgcaccatcgaagttgccaacaacgaatccatctgcaccttccacattgc |
199 |
Q |
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||||||| ||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| || |||||||| | ||| || ||| ||| |
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| T |
29605626 |
gcagcaatttctcctacttctaacaaacccacagccacggtcacggcagctgcaccatcgaagttgccaaccacaaatccatcggaaccatcaacactgc |
29605725 |
T |
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| Q |
200 |
ccctagacaaacaaaagcctattgtagcagcaactcctgctagtagtacaaa |
251 |
Q |
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| T |
29605726 |
cattatacaaacaacagcctattgtggctgcaactcctgctagtaatacaaa |
29605777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 29605896 - 29606024
Alignment:
| Q |
1 |
ttgccaaccacgaagccatcggcacctcccacattgaccctagacataaaaaagcctattgtggcagcaactcctgttagtaatacaaacaaacaacctg |
100 |
Q |
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|||||||| ||||| ||||| |||||| |||||||| ||||||||| | ||||||||||||| ||||||||||||| ||||| |||||| ||| ||| | |
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| T |
29605896 |
ttgccaacaacgaatccatctgcaccttccacattgcccctagacaaacaaaagcctattgtagcagcaactcctgctagtagtacaaagcaaccaccag |
29605995 |
T |
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| Q |
101 |
cagcaacttctcctacttctaacaaaccc |
129 |
Q |
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| T |
29605996 |
cagcaacctctcctatttctaacaaaccc |
29606024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 29605777 - 29605862
Alignment:
| Q |
206 |
acaaacaaaagcctattgtagcagcaactcctgctagtagtacaaagcaaccaccagcagcaacctctcctatttctaacaaaccc |
291 |
Q |
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|||||||| |||||||||| ||||||||||||||||||| |||||| ||| ||| |||||||| ||||||| ||||||||||||| |
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| T |
29605777 |
acaaacaacagcctattgtggcagcaactcctgctagtaatacaaacaaacaacctgcagcaacttctcctacttctaacaaaccc |
29605862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 29605741 - 29605785
Alignment:
| Q |
53 |
agcctattgtggcagcaactcctgttagtaatacaaacaaacaac |
97 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
29605741 |
agcctattgtggctgcaactcctgctagtaatacaaacaaacaac |
29605785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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