View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_4 (Length: 781)
Name: NF8919_low_4
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 636; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 20 - 770
Target Start/End: Original strand, 2526930 - 2527685
Alignment:
| Q |
20 |
cccacaacattttgttagatataactagagatttactagatattgttgatcatataggttgcgtgatcggaggctaaccggtgagcatcgttggaagctt |
119 |
Q |
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| T |
2526930 |
cccacaacattttgttagatataactagagatttactagatattgttgatcatataggttgcgtgatcggaggctaaccggtgagcatcgttggaagctt |
2527029 |
T |
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| Q |
120 |
agcgctagtgggaagatgtcaagaattttgagaggtggtaactgcacacaaagtggaagtgggggagatcgagtggtggttggcagttttcttgaatgca |
219 |
Q |
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| T |
2527030 |
agcgctagtgggaagatgtcaataattttgag--gtggtaactgcacacaaagtggaagtgggggagatcgagtggtggttggcagttttcttgaatgca |
2527127 |
T |
|
| Q |
220 |
gaatcaaagtgaagaaggtgaccgttctagaaaagtttcagccaggaggatttcaagcgtagcatcctttcaaaacgatggctattatatataatggttg |
319 |
Q |
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| T |
2527128 |
gaatcaaagtgaagaaggtgaccgttctagaaaagtttcagccaggaggatttcaagcgtagcttcctttcaaaacgatggctattatatataatggttg |
2527227 |
T |
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| Q |
320 |
taaaactacatatgctatatttaagactctatattggaaataagaaattttaaatttgaatttctgcatccgaaaaacttctattttaagacgctatatt |
419 |
Q |
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| T |
2527228 |
taaaactacatatgctatatttaagacgctatattggaaatacgaaattttaaatttgaatttctgcatccgaaaaacttctattttaagacgctatatt |
2527327 |
T |
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| Q |
420 |
tggattttaattaggttcaaaaactgttgtag---nnnnnnnnngtcatgtttgaatttttcacatacaaaaattgatatttagattttctacatacgaa |
516 |
Q |
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| T |
2527328 |
tggattttaattaggttcaaaaactgttgtagttttttttttttgtcatgtttgaatttttcacatacaaaaattgatatttagattttctacgtacgaa |
2527427 |
T |
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| Q |
517 |
aacttcaattttaaatgttatatttaaatttgctacgtctagaaacttatttagatacatgttccaatgtaattcatatttcaaattcatattttatctt |
616 |
Q |
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| T |
2527428 |
aacttcaattttaaatgttatatttaaatttgctacgtctagaaacttatttagatacacgttccaatgtaattcatatttcaaattcatattttatctt |
2527527 |
T |
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| Q |
617 |
actagtgtaatcataagagaacnnnnnnnatggatcgcaattgtgcaa----tcgttaaagcatactactagagcctttcatttcccctcaaaatatgga |
712 |
Q |
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| T |
2527528 |
attagtgtaatcataagagaactttttttatggatcgcaattgtgcaatcgttcgttatagcatactactagagcctttcatttcccctcaaaatatgga |
2527627 |
T |
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| Q |
713 |
gagaatccatctatactcatgaatttgagttgataccaatttcctcattaacaccaaa |
770 |
Q |
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| T |
2527628 |
gagaatccatctatactcatgaatttgagttgataccaatttcctcattaacaccaaa |
2527685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 2577515 - 2577573
Alignment:
| Q |
368 |
tttaaatttgaatttctgcatccgaaaaacttctattttaagacgctatatttggatttt |
427 |
Q |
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| T |
2577515 |
tttaaatttgaatttctgcatctgaaaa-cttctattttaagacgctgtatttggatttt |
2577573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 464 - 508
Target Start/End: Original strand, 2577601 - 2577645
Alignment:
| Q |
464 |
atgtttgaatttttcacatacaaaaattgatatttagattttcta |
508 |
Q |
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| T |
2577601 |
atgtttgaacttttcacatacaaatattgatatatagattttcta |
2577645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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