View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8919_low_42 (Length: 295)

Name: NF8919_low_42
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8919_low_42
NF8919_low_42
[»] chr7 (19 HSPs)
chr7 (13-287)||(12153428-12153703)
chr7 (13-286)||(10203350-10203620)
chr7 (26-286)||(9652855-9653115)
chr7 (45-274)||(23008791-23009020)
chr7 (38-264)||(12356174-12356399)
chr7 (40-280)||(19018781-19019020)
chr7 (40-286)||(19335347-19335594)
chr7 (63-286)||(30238609-30238833)
chr7 (30-286)||(30252975-30253233)
chr7 (38-162)||(8281048-8281174)
chr7 (30-162)||(11352217-11352351)
chr7 (45-162)||(11968831-11968947)
chr7 (30-286)||(10939655-10939914)
chr7 (187-286)||(11352670-11352769)
chr7 (77-162)||(5223645-5223730)
chr7 (77-162)||(10877782-10877867)
chr7 (45-162)||(11976826-11976942)
chr7 (87-152)||(14971156-14971221)
chr7 (87-152)||(15400632-15400697)
[»] chr4 (7 HSPs)
chr4 (24-285)||(16661370-16661629)
chr4 (26-286)||(13523880-13524140)
chr4 (38-286)||(20323624-20323871)
chr4 (38-285)||(15782841-15783091)
chr4 (30-286)||(11554181-11554434)
chr4 (77-162)||(15699262-15699347)
chr4 (175-282)||(27919683-27919791)
[»] chr5 (12 HSPs)
chr5 (13-286)||(29831058-29831331)
chr5 (13-286)||(27735730-27736003)
chr5 (68-283)||(22847202-22847416)
chr5 (41-286)||(23274021-23274265)
chr5 (38-286)||(16700968-16701215)
chr5 (77-286)||(19527202-19527411)
chr5 (38-162)||(25916879-25917006)
chr5 (46-280)||(20057074-20057308)
chr5 (38-204)||(20972293-20972463)
chr5 (40-282)||(24660762-24661007)
chr5 (30-162)||(18958525-18958659)
chr5 (183-286)||(24511123-24511226)
[»] chr1 (16 HSPs)
chr1 (38-286)||(17317213-17317460)
chr1 (38-284)||(17199684-17199929)
chr1 (26-286)||(29983912-29984172)
chr1 (38-286)||(20405537-20405785)
chr1 (40-286)||(25380245-25380479)
chr1 (40-280)||(23510606-23510844)
chr1 (41-286)||(15546197-15546439)
chr1 (45-280)||(18576885-18577120)
chr1 (45-280)||(13332720-13332954)
chr1 (168-280)||(24592182-24592295)
chr1 (64-127)||(22507301-22507365)
chr1 (38-286)||(18934816-18935067)
chr1 (183-286)||(22045541-22045644)
chr1 (183-282)||(25221074-25221173)
chr1 (38-144)||(17774380-17774485)
chr1 (230-282)||(19957422-19957474)
[»] scaffold0111 (1 HSPs)
scaffold0111 (13-286)||(25994-26264)
[»] chr2 (8 HSPs)
chr2 (40-286)||(17980382-17980627)
chr2 (121-286)||(22683881-22684047)
chr2 (30-286)||(26023413-26023672)
chr2 (64-286)||(17335424-17335648)
chr2 (13-156)||(17984334-17984475)
chr2 (183-282)||(39667079-39667178)
chr2 (78-162)||(18371592-18371676)
chr2 (230-282)||(23663013-23663065)
[»] scaffold0125 (1 HSPs)
scaffold0125 (38-286)||(6354-6602)
[»] scaffold0103 (2 HSPs)
scaffold0103 (26-286)||(39345-39605)
scaffold0103 (38-286)||(35043-35290)
[»] chr3 (10 HSPs)
chr3 (30-286)||(42368831-42369086)
chr3 (30-286)||(25922003-25922262)
chr3 (39-286)||(14889303-14889549)
chr3 (30-286)||(24507788-24508048)
chr3 (135-286)||(24697816-24697969)
chr3 (65-126)||(16974172-16974234)
chr3 (76-162)||(26883597-26883682)
chr3 (77-162)||(1343441-1343526)
chr3 (45-109)||(12755289-12755352)
chr3 (230-282)||(13885773-13885825)
[»] chr8 (5 HSPs)
chr8 (94-286)||(16647784-16647977)
chr8 (40-183)||(24374693-24374835)
chr8 (40-163)||(17125183-17125308)
chr8 (118-280)||(22741620-22741782)
chr8 (45-162)||(24175511-24175625)
[»] scaffold0561 (1 HSPs)
scaffold0561 (38-286)||(598-844)
[»] chr6 (8 HSPs)
chr6 (78-204)||(25930948-25931074)
chr6 (139-271)||(16598661-16598793)
chr6 (26-183)||(24454415-24454572)
chr6 (45-279)||(22728054-22728287)
chr6 (53-280)||(24005341-24005567)
chr6 (48-187)||(14881609-14881746)
chr6 (210-286)||(25929619-25929695)
chr6 (30-108)||(9337916-9337996)
[»] scaffold0032 (2 HSPs)
scaffold0032 (38-184)||(70668-70814)
scaffold0032 (224-286)||(70578-70639)
[»] scaffold0711 (1 HSPs)
scaffold0711 (30-116)||(4361-4448)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 12153428 - 12153703
Alignment:
Q  13 atcaagcaagcatatacacaattagcaaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcggg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  12153428 atcaagcaagcatatacacaattagcaaaattaaagaggaaagggaagagaaacgacattgagattttatagtagttcaccctttcttcctcgcttcggg 12153527  T
Q  113 ctacatctactcttcattatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaatta- 211  Q
    |||| |||||||| | | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12153528 ctacgtctactctccttgatggaaaacgtctccaccaaggaattccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattac 12153627  T
Q  212 ccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtcc 287  Q
    |||||||| || |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12153628 ccctagctcttcaattcatatgaaaccactcccccaatcttcaaataccctttgaaattggtgcttcttgatgtcc 12153703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 10203350 - 10203620
Alignment:
Q  13 atcaagcaagcatatacacaattag-caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgg 111  Q
    ||||||||| || ||||||||| |  |||| |||||||||| | |||||||||||||||||||||||| ||||||||||| |||||| |||||||||||     
T  10203350 atcaagcaatcaaatacacaatcaatcaaagttaaagaggataaggaagagaaacgacaccgagattt-atagtagttcaacctttcgtcctcgcttcga 10203448  T
Q  112 gctacatctactcttcattatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaatta 211  Q
    ||||| |||| |||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  10203449 gctacgtctattcttgat---ggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttgaaacta 10203545  T
Q  212 ccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||||   | || ||||| ||||||| |||||||||||||||  |||| | ||||||||||||||||||| |||||    
T  10203546 ccctgattcttcaattcctatgcaatcactcccccaatcttcgaataacatttgaaattggtgcttcttaatgtc 10203620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 9652855 - 9653115
Alignment:
Q  26 atacacaatta-gcaaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactc 124  Q
    ||||||||||| ||||||||||||||||  | ||||||| |  |||||||||||| |||||||||||||||||| || | |||| ||||||| |||||||    
T  9652855 atacacaattaagcaaaattaaagaggattgagaagagagaaaacaccgagattt-atagtagttcaccctttcgtcattgctttgggctacgtctactc 9652953  T
Q  125 ttcattatggaaaacgtctccaccaaggacttccactagaata-tgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctattt 223  Q
    ||| | |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||| ||||     
T  9652954 ttcttgatggaaaacgcctccaccaaggacttccactagaatattgaatgtttgattacaatgtgatgacaagaattccttgaaactaccctagttattc 9653053  T
Q  224 aattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||||| ||||||| |||||||||||| ||| || ||| |||||||||||||||||||||||||    
T  9653054 aattcttatgcaatcactcccccaat-tttcaaaaccttttgaaattggtgcttcttgatgtc 9653115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 45 - 274
Target Start/End: Complemental strand, 23009020 - 23008791
Alignment:
Q  45 aaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctc 144  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  ||||||| ||||||| ||||| ||| | |||||||| | || |||||||||||    
T  23009020 aaagaggaaagggaagagaaacgacaccgagattt-atagtagtttcccctttcatcctcgcctcggggtacgtttactcttcttgatagaaaacgtctc 23008922  T
Q  145 caccaaggacttccactagaatatgaatgtttgattacaa---tgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccact 241  Q
     ||||||||||||||||||||| |||||||||||||||||   |||||||||||||| |||||| ||||||||||  | || ||||| |||||||  |||    
T  23008921 taccaaggacttccactagaatttgaatgtttgattacaatgttgtgattacaagaactccttc-aattacccta-attttcaattcctatgcaattact 23008824  T
Q  242 cccccaatctttaaataccctttgaaattggtg 274  Q
    ||| ||||||| |||||||||||||||||||||    
T  23008823 cccacaatcttcaaataccctttgaaattggtg 23008791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 38 - 264
Target Start/End: Complemental strand, 12356399 - 12356174
Alignment:
Q  38 caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||||||||||||| || ||||||| | ||||||||||||| |||||||||  | ||||| || ||||||| |||||| | |||||||| | ||| |||    
T  12356399 caaaattaaagaggatagagaagagagaagacaccgagattt-atagtagtttgctctttcgtcgtcgcttcaggctacgtttactcttcttgatgaaaa 12356301  T
Q  138 acgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaac 237  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||  || | || ||||| ||||||      
T  12356300 acgtctccaccaaggacttccactataatatgaatgtttgattacaatgtgattacaagaattccttgaaactaccacagttcttcaattcctatgcagt 12356201  T
Q  238 cactcccccaatctttaaatacccttt 264  Q
    ||||| ||||||||| ||||| |||||    
T  12356200 cactctcccaatcttcaaataaccttt 12356174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 40 - 280
Target Start/End: Complemental strand, 19019020 - 19018781
Alignment:
Q  40 aaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaac 139  Q
    ||||||||||||||| |||| ||||| ||||||||||||| | |||||||  || |||| ||||| ||||||| |||||||||| ||| | |||| ||||    
T  19019020 aaattaaagaggaaaaggaacagaaatgacaccgagattt-acagtagttttccatttcgtcctcacttcgggatacatctacttttcttgatggtaaac 19018922  T
Q  140 gtctccaccaaggacttccactagaatatgaatgtttgattacaa---tgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaa 236  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||   |||||||||||||| |||||| ||||||||||  | || |||||  ||||||    
T  19018921 gtctccaccaaggacttccactaaaat-tgaatgtttgattacaatgttgtgattacaagaactccttc-aattacccta-attttcaattctcatgcaa 19018825  T
Q  237 ccactcccccaatctttaaataccctttgaaattggtgcttctt 280  Q
     ||||||||||||||| ||||||||||||||||||||| |||||    
T  19018824 tcactcccccaatcttcaaataccctttgaaattggtgtttctt 19018781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 40 - 286
Target Start/End: Original strand, 19335347 - 19335594
Alignment:
Q  40 aaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaac 139  Q
    ||||||||||||| ||  |||||  | |||| |||||||| ||| |||||| |||||||||||| ||||||  |||| || ||||||| | ||||||||     
T  19335347 aaattaaagaggatagaaaagagtgaagacatcgagattt-ataatagttccccctttcttccttgcttcgacctacctccactcttcttgatggaaaat 19335445  T
Q  140 gtctccaccaaggacttccactagaatatgaatgt--ttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaac 237  Q
    || ||||||||||||||||| | ||||||||||||  |||||||||||||| ||||||||||||||| |||  ||||||| | || ||||| |||||||     
T  19335446 gtttccaccaaggacttccattcgaatatgaatgtgtttgattacaatgtggttacaagaattccttgaaaagaccctagttcttcaattcctatgcaat 19335545  T
Q  238 cactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    |||||| |||||||| ||||| |||||||||||| ||||||||||||||    
T  19335546 cactcctccaatcttcaaataacctttgaaattgatgcttcttgatgtc 19335594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 286
Target Start/End: Original strand, 30238609 - 30238833
Alignment:
Q  63 aaacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttccact 161  Q
    |||| ||||||||||||| |||||||||| ||||||| || |||||||||| |||||||||||||| |  || ||||||||||||||||||||||||| |    
T  30238609 aaactacaccgagatttttatagtagttcgccctttcatcatcgcttcgggttacatctactcttcttggtgaaaaacgtctccaccaaggacttccagt 30238708  T
Q  162 -agaatatgaatgtttgattac-aatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaatctttaaatac 259  Q
     | | ||   |||||  ||||| ||||||||||||||| |||||| ||| || ||||| | || ||  |  ||| ||||||| |||||| ||| ||||||    
T  30238709 aatagtaaagatgttgaattacaaatgtgattacaagagttccttgaaactatcctagttcttcaa--cccatgtaaccacttccccaaacttcaaatac 30238806  T
Q  260 cctttgaaattggtgcttcttgatgtc 286  Q
    |||||||| ||||||||||| ||||||    
T  30238807 cctttgaatttggtgcttctcgatgtc 30238833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 30 - 286
Target Start/End: Original strand, 30252975 - 30253233
Alignment:
Q  30 acaattagcaaaattaaagagga-aagggaagagaaacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttc 127  Q
    ||||||| ||||| ||||||| | ||||| | | |||| ||||||||||||| |||||||||| ||||||| || |||||||||| ||||||||||||||    
T  30252975 acaattatcaaaactaaagagcataaggggaaaaaaactacaccgagatttttatagtagttcgccctttcgtcatcgcttcgggttacatctactcttc 30253074  T
Q  128 attatggaaaacgtctccaccaaggacttccact-agaatatgaatgtttgattac-aatgtgattacaagaattccttcaaattaccctagctatttaa 225  Q
     |  || ||||||| ||||||||||||||||| | | | ||   |||||  ||||| ||||||||||||||| |||||| ||| || ||||| | || ||    
T  30253075 ttggtgaaaaacgtatccaccaaggacttccagtaatagtaaagatgttgaattacaaatgtgattacaagagttccttgaaactatcctagttcttcaa 30253174  T
Q  226 ttcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
      |  ||| ||||||| |||||| ||| |||||||||||||| ||||||||||| ||||||    
T  30253175 --cccatgtaaccacttccccaaacttcaaataccctttgaatttggtgcttctcgatgtc 30253233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 8281174 - 8281048
Alignment:
Q  38 caaaattaaagaggaaagggaagaga-aacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatgga 135  Q
    ||||||||||||||| | |||| ||| ||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||| |  ||||||| |  || |    
T  8281174 caaaattaaagaggataaggaaaagagaacgacaccgatatttttatagttgttcaccctttcgtcctcgcttcgggctacgttaactcttcttggtgaa 8281075  T
Q  136 aaacgtctccaccaaggacttccacta 162  Q
    ||||||||||||||||| | |||||||    
T  8281074 aaacgtctccaccaaggtcatccacta 8281048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 11352217 - 11352351
Alignment:
Q  30 acaattagcaaaattaaagaggaaagggaagagaaa-cgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttc 127  Q
    ||||||| ||||||||||||||| | |||||||||| ||||||| | ||||| ||||||||||| |||||| || ||| || ||||||||||||||||||    
T  11352217 acaattatcaaaattaaagaggataaggaagagaaaacgacaccaatatttttatagtagttcatcctttcctcttcgttttgggctacatctactcttc 11352316  T
Q  128 attatggaaaacgtctccaccaaggacttccacta 162  Q
     |  || |||||| |||||| ||||| ||||||||    
T  11352317 ttggtgaaaaacgcctccacgaaggatttccacta 11352351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 11968947 - 11968831
Alignment:
Q  45 aaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctc 144  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||| |  |||| ||||||||||| | ||| |||||||||| |  | |||||||||||    
T  11968947 aaagaggaaagggaagagaaaagacaccg-gaatttatagtagttccctttttcatcctcgcttcgaggtacgtctactcttcttggtagaaaacgtctc 11968849  T
Q  145 caccaaggacttccacta 162  Q
     | |||| ||||||||||    
T  11968848 tatcaagaacttccacta 11968831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 286
Target Start/End: Complemental strand, 10939914 - 10939655
Alignment:
Q  30 acaattagcaaaattaaagaggaaagggaagaga-aacgacaccgaga-ttttatagtagttcaccctttcttcctcgcttcgggctacatctactcttc 127  Q
    ||||||| ||||||||||||||| | |||||||| ||||||||||| | |||||||||||||| ||||||  |||| | || ||| | | ||||||||||    
T  10939914 acaattatcaaaattaaagaggataaggaagagagaacgacaccgaaatttttatagtagttcgcccttttgtccttgttttgggatgc-tctactcttc 10939816  T
Q  128 attatggaaaacgtctccaccaaggacttccact-agaatatgaatgtttgattac-aatgtgattacaagaattccttcaaattaccctagctatttaa 225  Q
     |  || |||||   ||||||||||||||||||| | | ||  ||||||  ||||| ||||| ||||||| | |||||| ||| || ||||| | || ||    
T  10939815 ttggtgaaaaacacatccaccaaggacttccactaatagtaacaatgttgaattacaaatgtaattacaaaagttccttgaaactatcctagttcttcaa 10939716  T
Q  226 ttcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
      | |||| |||||||||   || ||| |||||||||||||| ||||||||||||||||||    
T  10939715 cccctatgtaaccactccaaaaaacttcaaataccctttgaatttggtgcttcttgatgtc 10939655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 286
Target Start/End: Original strand, 11352670 - 11352769
Alignment:
Q  187 tgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||||||||||| |||||| ||| || ||||| | || ||  | |||| |||||||||||||| ||| ||||| |||||||| | ||||||||||||||||    
T  11352670 tgattacaagagttccttgaaactatcctagttcttcaacccctatgtaaccactcccccaaacttcaaatatcctttgaattgggtgcttcttgatgtc 11352769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 5223645 - 5223730
Alignment:
Q  77 ttttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttccacta 162  Q
    ||||||||| ||||| |||||| ||||||||||||| ||| || ||||||| |  || |||||||||| ||||||| | |||||||    
T  5223645 ttttatagttgttcatcctttcgtcctcgcttcgggttacgtcaactcttcttggtgaaaaacgtctctaccaaggtcatccacta 5223730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 10877782 - 10877867
Alignment:
Q  77 ttttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttccacta 162  Q
    ||||||||| |||||||||||| ||||| ||| ||||||| || ||||||| |  || |||| ||||||||||||| | |||||||    
T  10877782 ttttatagttgttcaccctttcgtcctctctttgggctacgtcaactcttcttggtgaaaaatgtctccaccaaggtcatccacta 10877867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 11976942 - 11976826
Alignment:
Q  45 aaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctc 144  Q
    ||||||||||||||||||||| |||| || || ||||||||||||  |  |||| ||||||||||| | ||| |||||||||| | || |||||| |||     
T  11976942 aaagaggaaagggaagagaaaagacatcggga-tttatagtagttttctttttcgtcctcgcttcgaggtacgtctactcttcttgatagaaaacatctt 11976844  T
Q  145 caccaaggacttccacta 162  Q
     | |||| ||||||||||    
T  11976843 tatcaagaacttccacta 11976826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 14971156 - 14971221
Alignment:
Q  87 gttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaagg 152  Q
    ||||||| |||||||||||||||||||||| || ||||||| |  || |||||| |||||||||||    
T  14971156 gttcaccttttcttcctcgcttcgggctacgtcaactcttcttggtgaaaaacgcctccaccaagg 14971221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 15400632 - 15400697
Alignment:
Q  87 gttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaagg 152  Q
    ||||||| |||||||||||||||||||||| || ||||||| |  || |||||| |||||||||||    
T  15400632 gttcaccttttcttcctcgcttcgggctacgtcaactcttcttggtgaaaaacgcctccaccaagg 15400697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 24 - 285
Target Start/End: Complemental strand, 16661629 - 16661370
Alignment:
Q  24 atatacacaattagcaaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctact 123  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||||| |||||| |||||||||| ||||||    
T  16661629 atatacataattaacaaaattaaagaggaaagggcagagaaacgacaccgagattt-atagt-gttccccctttcgtcctcgtttcgggctacgtctact 16661532  T
Q  124 cttcattatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctattt 223  Q
     ||  |  || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||     
T  16661531 ttttttggtgcaaaacgtctccaccacggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaactaccctagctcttc 16661432  T
Q  224 aattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgt 285  Q
    ||||  ||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  16661431 aattactatgcaaccactcccccaatcatcaaatatcctttgaaattggtgcttcttgatgt 16661370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 13523880 - 13524140
Alignment:
Q  26 atacacaatta-gcaaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactc 124  Q
    ||||||||||| ||||||||||||||||  | ||||||| |  |||||||||||| |||||||||||||||||| || | |||| ||||||| |||||||    
T  13523880 atacacaattaagcaaaattaaagaggattgagaagagagaaaacaccgagattt-atagtagttcaccctttcgtcattgctttgggctacgtctactc 13523978  T
Q  125 ttcattatggaaaacgtctccaccaaggacttccactagaata-tgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctattt 223  Q
    ||| | |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||| ||||     
T  13523979 ttcttgatggaaaacgcctccaccaaggacttccactagaatattgaatgtttgattacaatgtgatgacaagaattccttgaaactaccctagttattc 13524078  T
Q  224 aattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||||| ||||||| |||||||||||| ||| || ||| |||||||||||||||||||||||||    
T  13524079 aattcttatgcaatcactcccccaat-tttcaaaaccttttgaaattggtgcttcttgatgtc 13524140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 286
Target Start/End: Original strand, 20323624 - 20323871
Alignment:
Q  38 caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    |||||||||| |||| |  ||||||| | ||||| ||||||| |||||||||| | ||||||| || ||||| |||||| |||||||||| | |||||||    
T  20323624 caaaattaaataggataaagaagagagaagacactgagattt-atagtagttcgctctttctttcttgcttcaggctacttctactcttcttgatggaaa 20323722  T
Q  138 acgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaac 237  Q
    |  || ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||| ||| | || ||||| ||| |||     
T  20323723 atttccccaccaaggacttccactagaatattaatgttttattacaatgtgattacaagaattccttgaaactaccttagtttttcaattcctatacaat 20323822  T
Q  238 cactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  20323823 cactcccccaatcttcaaataacctttgcaattggtgcttcttgatgtc 20323871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 285
Target Start/End: Complemental strand, 15783091 - 15782841
Alignment:
Q  38 caaaattaaagagga-aagggaagaga-aacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatgg 134  Q
    ||||||||||||||| ||||||| ||| || |||||||||||||| |||||||||| | ||||| ||||||||||| |||||||||||||||| ||   |    
T  15783091 caaaattaaagaggataagggaaaagagaaagacaccgagatttttatagtagttcgctctttcgtcctcgcttcgagctacatctactcttc-ttggtg 15782993  T
Q  135 aaaacgtctccaccaaggacttccacta-gaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatg 233  Q
    |||||  |||||||||||||||||||||  | ||  ||||||| ||   ||||||||||||||| |||||| ||| || ||||| | || ||  | ||||    
T  15782992 aaaacacctccaccaaggacttccactattagtaacaatgtttaatacaaatgtgattacaagagttccttgaaactatcctagttcttcaacccctatg 15782893  T
Q  234 caaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgt 285  Q
     || ||||||||||| ||| ||||| ||||| || ||||||| |||||||||    
T  15782892 taagcactcccccaaacttcaaataaccttttaatttggtgcatcttgatgt 15782841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 286
Target Start/End: Original strand, 11554181 - 11554434
Alignment:
Q  30 acaattagcaaaattaaagaggaaagggaagagaa-acgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttc 127  Q
    ||||||| ||||||||||||||| | ||||||||| || |||||||| |||| |||||||||      ||| | |||||||||||||||||||||| ||     
T  11554181 acaattatcaaaattaaagaggataaggaagagaagacaacaccgaggtttttatagtagtt------ttcgtactcgcttcgggctacatctacttttt 11554274  T
Q  128 attatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattaca-atgtgattacaagaattccttcaaattaccctagctatttaat 226  Q
     || || ||||||  ||||||||||| ||||||||   ||  ||||||  |||||| |||||||||||||| |||||| ||| |||||| | | || ||     
T  11554275 tttgtgaaaaacgcatccaccaaggatttccactaatgtaacaatgttgaattacagatgtgattacaagagttccttaaaactaccctggttcttcaac 11554374  T
Q  227 tcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
     | |||| |||||||||||  | ||| |||||||||||||| ||||||||||||||||||    
T  11554375 ccctatgtaaccactccccacaacttaaaataccctttgaatttggtgcttcttgatgtc 11554434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 15699262 - 15699347
Alignment:
Q  77 ttttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttccacta 162  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||  || |  || |||||||||||||||||| | |||||||    
T  15699262 ttttatagttgttcaccctttcttcctcacttcgggctacatcaactagtcttggtgaaaaacgtctccaccaaggtcatccacta 15699347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 27919683 - 27919791
Alignment:
Q  175 ttgattacaatgtgattacaagaattccttcaaattac-cctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggt 273  Q
    |||| ||||||||| ||||||||||||||| ||||||  ||||  | || ||  | ||||||| ||||||||||| ||| ||||| |||||||| |||||    
T  27919683 ttgaatacaatgtgtttacaagaattccttgaaattaaacctaattcttcaacccctatgcaaacactcccccaaacttcaaataacctttgaatttggt 27919782  T
Q  274 gcttcttga 282  Q
    ||| |||||    
T  27919783 gctccttga 27919791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 29831058 - 29831331
Alignment:
Q  13 atcaagcaagcatatacacaattag-caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgg 111  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||||||||||| || | |||||||| |||||||||||||||||||||||||||||||    
T  29831058 atcaagcaagcatatacacaattaatcaaaattaaagaggatagggaagagaaaagatatcgagattt-atagtagttcaccctttcttcctcgcttcgg 29831156  T
Q  112 gctacatctactcttcattatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaatta 211  Q
     |||| || ||||||| | ||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||| ||| ||    
T  29831157 tctacgtccactcttcttgatggagaatgtctccaccaaggacttccactagaatatgaatgtttgattataatgtgactaaaataattccttgaaacta 29831256  T
Q  212 ccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    || ||| | || ||||| |||||||||||||||| |||||| ||||||||||||||| ||||||||||| |||||    
T  29831257 ccttagttcttcaattcctatgcaaccactcccctaatcttcaaataccctttgaaactggtgcttctttatgtc 29831331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 27735730 - 27736003
Alignment:
Q  13 atcaagcaagcatatacacaattag-caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgg 111  Q
    |||||| || || |||||||||||  |||||||||||||||  | ||||||| | |||| |||||||| |||||||||| | ||||| |||||||||| |    
T  27735730 atcaagaaatcaaatacacaattaatcaaaattaaagaggatggagaagagagaagacatcgagattt-atagtagttcgctctttcatcctcgcttcag 27735828  T
Q  112 gctacatctactcttcattatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaatta 211  Q
    ||||  ||||| |||| | ||| |||||| |||||||||||||||||||||||||   |||| |||||||||||||||||||||||||| ||| ||| ||    
T  27735829 gctatgtctacacttcttgatgaaaaacgcctccaccaaggacttccactagaatgataatgcttgattacaatgtgattacaagaatttcttgaaacta 27735928  T
Q  212 ccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    |||||| | || ||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  27735929 ccctagttcttcaattcatatgcaatcactcccctaatcttcaaataacctttgaaattggtgcttcttgatgtc 27736003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 68 - 283
Target Start/End: Complemental strand, 22847416 - 22847202
Alignment:
Q  68 acaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttccactagaata 167  Q
    ||||||||||||  ||||||||||||||||| ||| |||||| |||||| || ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  22847416 acaccgagatttg-tagtagttcaccctttcgtccccgcttcaggctacgtccactcttcttgatggaaaacgcctccaccaaggacttccactagaata 22847318  T
Q  168 -tgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttga 266  Q
     ||||||||||||||||| ||||||||||||||||||| ||| |||||||  | || |||||  |||||| ||||||||||||||| ||| ||| |||||    
T  22847317 ttgaatgtttgattacaaagtgattacaagaattccttgaaactaccctaattcttcaattccaatgcaatcactcccccaatcttcaaa-accttttga 22847219  T
Q  267 aattggtgcttcttgat 283  Q
    ||| |||||||||||||    
T  22847218 aatcggtgcttcttgat 22847202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 41 - 286
Target Start/End: Original strand, 23274021 - 23274265
Alignment:
Q  41 aattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacg 140  Q
    ||||| |||||| || ||||||| |  ||||| |||||| ||||||||||| |||||| ||||||||||||||||| |||||||||| | |||||||| |    
T  23274021 aattatagaggatagagaagagagagaacaccaagattt-atagtagttcatcctttcgtcctcgcttcgggctacgtctactcttcttgatggaaaatg 23274119  T
Q  141 tctccaccaaggacttccactagaat-atgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaacca 239  Q
      |||||||| |||||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||| |||||||| | || ||||| ||||||| ||    
T  23274120 attccaccaaagacttccagtagaataatgaatgtttgattacaatgtgaatacaagaattccttgaaactaccctagttcttcaattcctatgcaatca 23274219  T
Q  240 ctcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    |||||| |||||| ||| ||| || ||||||| ||||||||||||||    
T  23274220 ctccccaaatcttcaaa-acctttcgaaattgatgcttcttgatgtc 23274265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 38 - 286
Target Start/End: Complemental strand, 16701215 - 16700968
Alignment:
Q  38 caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||||||||||||| || ||||||| |  ||| |||||||| ||||||||| || ||||| |||| |||| || |||| |||||||||| | ||| |||    
T  16701215 caaaattaaagaggatagagaagagataaaacatcgagattt-atagtagtttactctttcgtccttgctttggtctacgtctactcttcttgatgaaaa 16701117  T
Q  138 acgtctccaccaaggacttccactagaata-tgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaa 236  Q
    ||  |||||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||| ||| ||| |||||||  | || ||| | |||||||    
T  16701116 acacctccaccaaggactcccactagaatattgaatgtttgattacaatgtgattagaataatttcttgaaactaccctatttcttcaatgcctatgcaa 16701017  T
Q  237 ccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
      |||||| ||||||| ||| ||||||||||||| | |||||||||||||    
T  16701016 ttactccctcaatcttcaaa-accctttgaaatttgggcttcttgatgtc 16700968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 286
Target Start/End: Complemental strand, 19527411 - 19527202
Alignment:
Q  77 ttttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttcca-ctagaatatgaatgtt 175  Q
    |||||||||||||||||||||| | |||||||||||||||  ||||||||| |  || |||||| ||||| |||||||||||| | | | ||  |||| |    
T  19527411 ttttatagtagttcaccctttcgttctcgcttcgggctacgcctactcttcttggtgaaaaacgcctccatcaaggacttccatcaatagtaacaatg-t 19527313  T
Q  176 tgattac-aatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtg 274  Q
    ||| ||| ||||||||||| ||| |||||| ||| || ||||| | || ||  | |||| |||||||||||||| ||| |||||||||||||| ||||||    
T  19527312 tgaatacaaatgtgattacgagagttccttgaaactatcctagttcttcaacgc-tatgtaaccactcccccaaacttcaaataccctttgaatttggtg 19527214  T
Q  275 cttcttgatgtc 286  Q
    || |||||||||    
T  19527213 ctccttgatgtc 19527202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 25916879 - 25917006
Alignment:
Q  38 caaaattaaagagga-aagggaagaga-aacgacaccgagatttta-tagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatgg 134  Q
    ||||||||||||||| ||||||| ||| ||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||| |  ||     
T  25916879 caaaattaaagaggataagggaaaagagaacgacaccaagattttaatagtagttcaccctttcgtcctcacttcgggctacgtctactcttcttggtga 25916978  T
Q  135 aaaacgtctccaccaaggacttccacta 162  Q
    |||||| ||||||||||| | |||||||    
T  25916979 aaaacgcctccaccaaggtcatccacta 25917006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 20057074 - 20057308
Alignment:
Q  46 aagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctcc 145  Q
    ||||||||| |||||||||| |||||||  |||| ||||| |||| ||||||| |||| ||||| || ||| || ||||||| | || || ||||||||     
T  20057074 aagaggaaaaggaagagaaaagacaccgcaattt-atagtggttctccctttcatccttgcttcaggatacctccactcttcttgatagagaacgtctct 20057172  T
Q  146 accaaggacttccactagaatatgaatgtttgattacaa---tgtgattacaagaattccttcaaattaccctagctatttaattcatatgc-aaccact 241  Q
    | || |||||||||||| ||||  ||  |||||||||||   |||||||||||||| |||||| ||||||||||  | || |||| |||||| ||| |      
T  20057173 atcatggacttccactaaaatagaaa--tttgattacaatgttgtgattacaagaactccttc-aattaccctaatttttcaatttatatgcaaacaaaa 20057269  T
Q  242 cccccaatctttaaataccctttgaaattggtgcttctt 280  Q
    ||| ||||||| || ||||| |||||||||||| |||||    
T  20057270 ccctcaatcttcaagtaccccttgaaattggtgtttctt 20057308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 20972463 - 20972293
Alignment:
Q  38 caaaattaaagagga-aagggaagaga-aacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatgg 134  Q
    |||||||||| |||| ||||||| ||| ||| ||||||||||||| |||||||||||||||||  |||||||||| |||||| |||||||||| |  ||     
T  20972463 caaaattaaacaggataagggaaaagagaacaacaccgagatttttatagtagttcacccttttgtcctcgcttcaggctacgtctactcttcttggtga 20972364  T
Q  135 aaaacgtctccaccaaggacttccact-agaatatgaatgtttgattacaatgtgattacaagaattcctt 204  Q
    ||||   ||||||||||| | |||||| | ||||  ||||||  || | ||||||||||||||| ||||||    
T  20972363 aaaaaacctccaccaaggtcatccactgataataacaatgttgaataaaaatgtgattacaagagttcctt 20972293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 282
Target Start/End: Complemental strand, 24661007 - 24660762
Alignment:
Q  40 aaattaaagaggaaagggaagaga-aacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||||||||||| | |||| ||| ||||||||| | ||||| ||||| |||||| ||||| ||||||||| | ||||| || ||||||| |  || |||    
T  24661007 aaattaaagaggataaggaaaagagaacgacaccaatatttttatagttgttcactctttcgtcctcgctttgagctacgtcaactcttcttggtgaaaa 24660908  T
Q  138 acgtctccaccaaggacttccactagaa-tatgaatgtttgattacaa-tgtgattacaagaattccttcaaattaccctagctatttaattcatatgca 235  Q
    |||  ||||||||||   |||||||  | ||  |||||| || ||||| ||||||||||||| |||||| ||| || ||||| | || || || |||| |    
T  24660907 acgcatccaccaaggttatccactaatagtaataatgtt-gaatacaaatgtgattacaagagttccttgaaactatcctagttcttcaactcctatgta 24660809  T
Q  236 accactcccccaatctttaaataccctttgaaattggtgcttcttga 282  Q
    | ||||||||||| ||| ||||| |||||||| ||||||||||||||    
T  24660808 agcactcccccaaacttcaaataacctttgaatttggtgcttcttga 24660762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 18958659 - 18958525
Alignment:
Q  30 acaattagcaaaattaaagaggaaagggaagaga-aacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttc 127  Q
    ||||||| ||||||||||||||| | |||||| | || |||||| ||||||| |||||| ||| | ||||| ||||| ||||| ||||| |||||| |||    
T  18958659 acaattatcaaaattaaagaggataaggaagatataaagacacctagatttttatagtatttctctctttcgtcctcacttcgagctacgtctacttttc 18958560  T
Q  128 attatggaaaacgtctccaccaaggacttccacta 162  Q
     |  || |||||| ||||||||||||||| |||||    
T  18958559 ttggtgaaaaacgcctccaccaaggacttacacta 18958525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 24511123 - 24511226
Alignment:
Q  183 aatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttga 282  Q
    ||||||||||||||| |||||| ||| || ||||| | || ||  | |||| ||||||||||  || ||| |||| || |||||| ||||||||||||||    
T  24511123 aatgtgattacaagagttcctttaaactatcctagttcttcaacccctatgtaaccactcccttaaacttcaaatgccttttgaatttggtgcttcttga 24511222  T
Q  283 tgtc 286  Q
    ||||    
T  24511223 tgtc 24511226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 38 - 286
Target Start/End: Original strand, 17317213 - 17317460
Alignment:
Q  38 caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||||||||||||| || ||||||| | ||||||||||||| |||||||||| ||||||| ||||||||||||||||| || ||||||| | |||||||    
T  17317213 caaaattaaagaggatagagaagagagaagacaccgagattt-atagtagttcgccctttcgtcctcgcttcgggctacgtcaactcttcttgatggaaa 17317311  T
Q  138 acgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaac 237  Q
    |||||||||||||||||||||| ||||||   |||||||||||| |||||| ||||||||||||||| ||| |||||||| | || ||||| |||||||     
T  17317312 acgtctccaccaaggacttccaatagaatgataatgtttgattaaaatgtgtttacaagaattccttgaaactaccctagttcttcaattcctatgcaat 17317411  T
Q  238 cactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  17317412 cactcccccaatcttcaaataacctttgaaattggtgcttcttgatgtc 17317460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 38 - 284
Target Start/End: Original strand, 17199684 - 17199929
Alignment:
Q  38 caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||||||||||| | || ||||||| |  |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |||||||    
T  17199684 caaaattaaagagaatagagaagagagaaaacaccgagattt-atagtagttcaccctttcgtcctcgcttcgggctacatctactcttcttgatggaaa 17199782  T
Q  138 acgtctccaccaaggacttccactagaata-tgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaa 236  Q
    | | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||  ||| | || ||||| |||||||    
T  17199783 atgcctccaccaacgacttccactagaatattgaatgtttgattacaatgtgattacaagaattccttgaaactacaatagttcttcaattcctatgcaa 17199882  T
Q  237 ccactcccccaatctttaaataccctttgaaattggtgcttcttgatg 284  Q
     |||||| |||||||| ||| ||| |||||||||| ||||||||||||    
T  17199883 tcactccgccaatcttcaaa-accttttgaaattgatgcttcttgatg 17199929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 29983912 - 29984172
Alignment:
Q  26 atacacaattag-caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactc 124  Q
    |||||||||||  ||||||||||||||| ||  |||||| | |||||| |||||| ||||| |||| ||||||| || |||||||||||||| |||||||    
T  29983912 atacacaattaatcaaaattaaagaggatagaaaagagagaagacaccaagattt-atagttgttcgccctttcatcatcgcttcgggctacgtctactc 29984010  T
Q  125 ttcattatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctattta 224  Q
    |||   ||||||||| |||||||  |||||||||||||||||   ||||||| ||||||||||||||||||||||||||| ||| |||||||  | || |    
T  29984011 ttctcgatggaaaacctctccacagaggacttccactagaatgataatgtttaattacaatgtgattacaagaattccttgaaactaccctaattcttca 29984110  T
Q  225 attcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
     ||| ||||||| ||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  29984111 gttcctatgcaatcactcccccaatcttcaaataagctttgaaattggtgcttcttgatgtc 29984172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 38 - 286
Target Start/End: Original strand, 20405537 - 20405785
Alignment:
Q  38 caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||| ||||||||||||  || ||| | |||||| |||||| | ||| |||||| ||||| ||||||||||| |||||||| ||||||| | |||||||    
T  20405537 caaaactaaagaggaaagataacagagaagacaccaagattt-acagtggttcactctttcgtcctcgcttcgagctacatccactcttcttgatggaaa 20405635  T
Q  138 acgtctccaccaaggacttccactagaata-tgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaa 236  Q
    || ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||| |  | | ||| |||||||    
T  20405636 acatctccaccaaggacttcaactagaatattgaatgtttgattacaatgtgattacaagaattccttgaaactaccatagttcgtcagttcctatgcaa 20405735  T
Q  237 ccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
      |||||||||||||| ||||| ||||||||||| ||||||| |||||||    
T  20405736 ttactcccccaatcttcaaataacctttgaaatttgtgcttcatgatgtc 20405785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 286
Target Start/End: Complemental strand, 25380479 - 25380245
Alignment:
Q  40 aaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaac 139  Q
    ||||||||||||||  | |||||||||||||| || |||| | |||||||||||||||| |||||||||||||||||||||||||||| |  ||||||||    
T  25380479 aaattaaagaggaatagaaagagaaacgacactgaaattt-acagtagttcaccctttcgtcctcgcttcgggctacatctactcttcttggtggaaaac 25380381  T
Q  140 gtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaacca 239  Q
     |||||| | ||||||||||||| ||| |||||||||||||           ||||| ||||||||||| ||||||| || || ||||  ||||||||||    
T  25380380 atctccatcgaggacttccactaaaatgtgaatgtttgatt-----------acaaggattccttcaaactaccctaactcttcaattattatgcaacca 25380292  T
Q  240 ctcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  25380291 ctccctcaatcttcaaataccctttgaaattggtgcttcttgatgtc 25380245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 280
Target Start/End: Original strand, 23510606 - 23510844
Alignment:
Q  40 aaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaac 139  Q
    |||||||||||||||||||||||||||| |||  | |||| |||||||||| |||||| ||| |||||||||| ||| | |||| ||| | |||||||||    
T  23510606 aaattaaagaggaaagggaagagaaacggcacgaatattt-atagtagttccccctttgttc-tcgcttcggggtacgtttacttttcttgatggaaaac 23510703  T
Q  140 gtctccaccaaggacttccactagaatatgaatgtttgattacaa---tgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaa 236  Q
    ||||||||||||||||||||||| ||| ||||| | |||||||||   |||||||||||||| || ||| ||||||||||  | ||||| || |||||||    
T  23510704 gtctccaccaaggacttccactaaaat-tgaatttctgattacaatgttgtgattacaagaaatctttc-aattacccta-atttttaactcttatgcaa 23510800  T
Q  237 ccactcccccaatctttaaataccctttgaaattggtgcttctt 280  Q
     ||||||||||| ||| ||||||||||||||||||||| |||||    
T  23510801 tcactcccccaaccttcaaataccctttgaaattggtgtttctt 23510844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 286
Target Start/End: Complemental strand, 15546439 - 15546197
Alignment:
Q  41 aattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacg 140  Q
    |||||||||||| |  ||||||| | || ||| ||| ||| |||| |||| | ||||| ||||||||||  |||||||| ||||||| | |||||| |||    
T  15546439 aattaaagaggatatagaagagagaagatacc-agaatttttagtggttcgctctttcgtcctcgcttcaagctacatccactcttcttgatggaatacg 15546341  T
Q  141 tctccaccaaggacttccactagaat-atgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaacca 239  Q
    |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||  | | || ||||| ||||||| ||    
T  15546340 tctccaccaaagacttccactagaataatgaatgtttgattacaacgtgattacaagaattccttgaaactaccc--gttcttcaattcctatgcaatca 15546243  T
Q  240 ctcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||  ||||| ||| ||||| |||||||||| ||||||| ||||||||    
T  15546242 ct-tcccaagcttcaaataacctttgaaatcggtgcttattgatgtc 15546197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 280
Target Start/End: Original strand, 18576885 - 18577120
Alignment:
Q  45 aaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctc 144  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||  ||||| ||| |||||||||| |  | |||||||||||    
T  18576885 aaagaggaaagggaagagaaacgacactgagattt-atagtagttccccctttcgtcctcgtatcggggtacgtctactcttcttggtagaaaacgtctc 18576983  T
Q  145 caccaaggacttccactagaatatgaatgtttgattacaatgt---gattacaagaattccttcaaattaccctagctatttaattcatatgcaaccact 241  Q
     || |||||||||||||| ||| ||||||||||||||||||||   ||||||||||| |||||||| ||| ||||  | || ||||| |||||||| ||     
T  18576984 tacaaaggacttccactaaaat-tgaatgtttgattacaatgttgtgattacaagaactccttcaa-ttatcctaatt-ttcaattcctatgcaactaca 18577080  T
Q  242 -cccccaatctttaaataccctttgaaattggtgcttctt 280  Q
     ||||| ||||  ||||||| ||||||||||||| |||||    
T  18577081 acccccgatctacaaataccatttgaaattggtgtttctt 18577120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 280
Target Start/End: Original strand, 13332720 - 13332954
Alignment:
Q  45 aaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcat-tatggaaaacgtct 143  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||  ||||||| |||| |||||||| ||| ||| |||||| | |    |||||||||    
T  13332720 aaagaggaaagggaagataaacgacaacgaga-tttatagtagtttcccctttcatccttgcttcggggtacgtctcctcttcttgttaaaaaaacgtct 13332818  T
Q  144 ccaccaaggacttccactagaatatgaatgtttgattacaa---tgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaacca- 239  Q
    | || |||||||||||||||||| ||||||||| |||||||   ||||||||||||||  |||  |||||||| ||  | || |||||||||||| |||     
T  13332819 ctactaaggacttccactagaat-tgaatgtttaattacaatgttgtgattacaagaa-acct--aaattacctta-attttcaattcatatgcagccat 13332913  T
Q  240 ctcccccaatctttaaataccctttgaaattggtgcttctt 280  Q
      ||||||||||| ||||||||||||||||||||| |||||    
T  13332914 agcccccaatcttcaaataccctttgaaattggtgtttctt 13332954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 24592182 - 24592295
Alignment:
Q  168 tgaatgtttgattacaatgt---gattacaagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaatctttaaatacccttt 264  Q
    |||||| |||||||||||||   ||||| ||||| |||||||| | ||||||  | |||||||||||||||  ||||||||||||||| |||||||||||    
T  24592182 tgaatgattgattacaatgttgtgattataagaactccttcaact-accctaatt-tttaattcatatgcagtcactcccccaatcttcaaatacccttt 24592279  T
Q  265 gaaattggtgcttctt 280  Q
    |||||||||| |||||    
T  24592280 gaaattggtgtttctt 24592295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 22507301 - 22507365
Alignment:
Q  64 aacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttc 127  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||    
T  22507301 aacgacaccgagatttttattgtagttcaccctttcgtcctcgcttcgggctacatctacccttc 22507365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 286
Target Start/End: Original strand, 18934816 - 18935067
Alignment:
Q  38 caaaattaaagaggaaagggaagaga-aacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatgga 135  Q
    ||||||||||||||| | |||| ||| || |||||| | ||||| |||||||||||||||||| ||| ||||||||||||| |||||| ||| |  || |    
T  18934816 caaaattaaagaggataaggaaaagagaatgacaccaatatttttatagtagttcaccctttcatccccgcttcgggctacgtctactgttcttggtgaa 18934915  T
Q  136 aaacgtctccaccaaggacttccact-agaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgc 234  Q
    ||||| ||||| ||||| | |||||| | | ||  ||||||  ||   ||||||||||||||| |||||| ||| || ||||  | || ||  |  |||     
T  18934916 aaacgcctccagcaaggtcatccactaatagtaacaatgttgaatagaaatgtgattacaagagttccttgaaactatcctacttcttcaacccccatgt 18935015  T
Q  235 aaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    || ||||||||||| ||| ||||| |||||||| ||||||||||| ||||||    
T  18935016 aagcactcccccaaacttcaaataacctttgaatttggtgcttctcgatgtc 18935067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 22045644 - 22045541
Alignment:
Q  183 aatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttga 282  Q
    ||||||||||| ||| |||||| ||| || ||||| | || ||  | |||| || ||||||||||||||||||||| |||||||| ||||||||||||||    
T  22045644 aatgtgattactagagttccttaaaactatcctagttcttcaacccctatgtaaacactcccccaatctttaaataacctttgaatttggtgcttcttga 22045545  T
Q  283 tgtc 286  Q
    ||||    
T  22045544 tgtc 22045541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 282
Target Start/End: Complemental strand, 25221173 - 25221074
Alignment:
Q  183 aatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttga 282  Q
    ||||||||||||||| |||||| ||| || ||||| | || || || |||| ||  |||||||||| ||| |||||  ||||||| ||||||||||||||    
T  25221173 aatgtgattacaagagttcctttaaactatcctagttcttcaactcctatgtaaggactcccccaaacttcaaataatctttgaatttggtgcttcttga 25221074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 17774485 - 17774380
Alignment:
Q  38 caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    |||||||||||||||||| |||||| ||| |||||   |||||||| |||||  | ||||| |||||||||||||  || |||||||||| | || |||     
T  17774485 caaaattaaagaggaaagagaagag-aacaacaccataattttataatagtttcctctttcgtcctcgcttcggggcacgtctactcttcgtgatagaat 17774387  T
Q  138 acgtctc 144  Q
    |||||||    
T  17774386 acgtctc 17774380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 19957422 - 19957474
Alignment:
Q  230 tatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttga 282  Q
    ||||||| ||||||||||| ||| ||||| |||||||| |||||||| |||||    
T  19957422 tatgcaaacactcccccaaacttcaaataacctttgaatttggtgctccttga 19957474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 25994 - 26264
Alignment:
Q  13 atcaagcaagcatatacacaattagcaaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcggg 112  Q
    ||||||||| || |||||||||||  |  ||||||||||| || ||||||||| ||||| ||||||| ||||| |||| ||||||| |||||||||||||    
T  25994 atcaagcaatcaaatacacaatta--atcattaaagaggatagagaagagaaaagacactgagattt-atagtggttcgccctttcgtcctcgcttcggg 26090  T
Q  113 ctacatctactcttcattatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattac 212  Q
    |||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| |||    
T  26091 ctacgtctactcttcttgatggaaaatgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattactagaactccttgaaactac 26190  T
Q  213 cctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||||| | ||  |||| ||||||| |||||| |||||||| ||||| |||||||||| ||||||||||||||||    
T  26191 cctagttcttccattcttatgcaatcactccaccaatcttcaaataacctttgaaatcggtgcttcttgatgtc 26264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 286
Target Start/End: Complemental strand, 17980627 - 17980382
Alignment:
Q  40 aaattaaagaggaaagggaagagaaa--cgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||||||||||||||| |||||  |  | ||||||||  ||||||||||||| ||||||| ||||| ||||||| |||| ||||||||| | |||||||    
T  17980627 aaattaaagaggaaaggaaagagttattcaacaccgag--tttatagtagttc-ccctttcgtcctcacttcggggtacacctactcttcttgatggaaa 17980531  T
Q  138 acgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaac 237  Q
    || |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||| |||||| ||| |||||| || ||||| |||| |||    
T  17980530 acctctccaccaaggacttccactaaaaattgaatgtttgattacaatgtgattacaagaattcattcaaactactctagctcttcaattcctatggaac 17980431  T
Q  238 cactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||||||||||||||| |||| || |||||||||||||||||||||||||    
T  17980430 cactcccccaatcttcaaattccatttgaaattggtgcttcttgatgtc 17980382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 121 - 286
Target Start/End: Original strand, 22683881 - 22684047
Alignment:
Q  121 actcttcattatggaaaacgtctccaccaaggacttccactagaatat-gaatgtttgattacaatgtgattacaagaattccttcaaattaccctagct 219  Q
    ||||||| | ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| ||| |||| ||  |    
T  22683881 actcttcttgatggaaaacatctccaccaaggacttccaatagaatattgaatgtttgattacaatgtgattacaaaaattccttaaaactaccttaatt 22683980  T
Q  220 atttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
     || ||||| |||| ||  || ||||||||||| ||||| ||||||||||| |||||||||||||||    
T  22683981 cttcaattcctatggaataacacccccaatcttcaaataacctttgaaattagtgcttcttgatgtc 22684047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 286
Target Start/End: Complemental strand, 26023672 - 26023413
Alignment:
Q  30 acaattagcaaaattaaagaggaaagggaagaga-aacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttc 127  Q
    ||||||| |||||||||||||  |||| || ||| ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||  ||||||||||    
T  26023672 acaattatcaaaattaaagagataaggaaaaagagaacgacaccgagatttttatagtagttcatcctttcgtcctcgcttcgggctatgtctactcttc 26023573  T
Q  128 attatggaaaacgtctccaccaaggacttccact-agaatatgaatgtttgattac-aatgtgattacaagaattccttcaaattaccctagctatttaa 225  Q
     |  || |||||  |||||||||||||||||||| | | ||  |||| | || ||| ||||||||| ||||| |||||| ||| || ||||| |  | ||    
T  26023572 ttggtgaaaaacacctccaccaaggacttccactaatagtaacaatg-tcgaatacaaatgtgattgcaagagttccttgaaactatcctagttcgtcaa 26023474  T
Q  226 ttcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
      | |||| |||||||||||||| ||| |||||||||||||| ||||||||||||||||||    
T  26023473 cccctatgtaaccactcccccaaacttcaaataccctttgaatttggtgcttcttgatgtc 26023413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 64 - 286
Target Start/End: Original strand, 17335424 - 17335648
Alignment:
Q  64 aacgacaccgaga-ttttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttccact- 161  Q
    ||||||||||| | |||||||||||||||||||||| |||||||||   ||||| |||||||||| |  || |||||  ||||||||| | | ||||||     
T  17335424 aacgacaccgatacttttatagtagttcaccctttcgtcctcgctttaagctacgtctactcttcttggtgaaaaacacctccaccaatgtcatccacta 17335523  T
Q  162 agaatatgaatgtttgattac-aatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaatctttaaatacc 260  Q
    | | ||  |||| |||| ||| ||||||||||||||| || ||| |||||| ||||| | || || |  |||| || ||||||||||  ||| ||||| |    
T  17335524 acagtaacaatg-ttgaatacaaatgtgattacaagagtttcttgaaattatcctagttcttcaacttctatgtaagcactcccccagacttgaaataac 17335622  T
Q  261 ctttgaaattggtgcttcttgatgtc 286  Q
     |||||| ||||||||||||||||||    
T  17335623 gtttgaatttggtgcttcttgatgtc 17335648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 17984475 - 17984334
Alignment:
Q  13 atcaagcaagcatatacacaattagcaaaattaaagaggaaagggaagagaaa--cgacaccgagattttatagtagttcaccctttcttcctcgcttcg 110  Q
    ||||| |||||| |||||||||||   ||||||||||||||||| |||||  |  |||||| ||||||| |||||| ||  ||||||| |||||| ||||    
T  17984475 atcaaacaagcacatacacaatta---aaattaaagaggaaaggaaagagttattcgacactgagattt-atagtaatttcccctttcgtcctcgtttcg 17984380  T
Q  111 ggctacatctactcttcattatggaaaacgtctccaccaaggactt 156  Q
    || |||| ||||||||| | || |||||| |||| |||||||||||    
T  17984379 ggatacacctactcttcttgattgaaaacctctctaccaaggactt 17984334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 282
Target Start/End: Complemental strand, 39667178 - 39667079
Alignment:
Q  183 aatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttga 282  Q
    |||||||||||||||  ||||| ||| |||||| | | || |  ||||||  |||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  39667178 aatgtgattacaagagatccttgaaactaccctggttcttcacctcatatctaaccactcccccaaacttcaaataccctttgaatttggtgcttcttga 39667079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 18371676 - 18371592
Alignment:
Q  78 tttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttccacta 162  Q
    |||||||| |||| ||||||| ||||||||||||| ||| || | ||||| |  | ||||| ||||| | |||||||||||||||    
T  18371676 tttatagtggttccccctttcgtcctcgcttcggggtacctccattcttcttgttagaaaatgtctctatcaaggacttccacta 18371592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 23663013 - 23663065
Alignment:
Q  230 tatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttga 282  Q
    ||||||| ||||||||||| ||| ||||| |||||||| |||||||| |||||    
T  23663013 tatgcaaacactcccccaaacttcaaataacctttgaatttggtgctccttga 23663065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 38 - 286
Target Start/End: Complemental strand, 6602 - 6354
Alignment:
Q  38 caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||||||||||||| ||  |||||| | |  |||||||||| ||||| ||||   ||||| ||||| ||||| ||||| || ||||||| | |||||||    
T  6602 caaaattaaagaggatagaaaagagatagggtaccgagattt-atagtggttcgttctttcgtcctcacttcgagctacctccactcttcttgatggaaa 6504  T
Q  138 acgtctccaccaaggacttccactagaata-tgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaa 236  Q
    |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||  || |||||||| | || ||||| |||||||    
T  6503 acgtctccaccaagaacttccactagaataatgaatgttttattacaatgtgattacaagaattccttggaactaccctagttcttcaattcctatgcaa 6404  T
Q  237 ccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
     |||| ||||||| |||||||| ||||||||||||||| |||||||||||    
T  6403 tcactaccccaatatttaaataacctttgaaattggtgtttcttgatgtc 6354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 39345 - 39605
Alignment:
Q  26 atacacaattag-caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactc 124  Q
    |||||||||||  ||||||||||||||| || ||||||| | |||| |||||||| |||||||||||||||||  || || |||||||||||||||||||    
T  39345 atacacaattaatcaaaattaaagaggatagagaagagagaagacatcgagattt-atagtagttcacccttttgtcttctcttcgggctacatctactc 39443  T
Q  125 ttcattatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctattta 224  Q
    |||   ||||||||| ||||||| | ||||||||||||| |||| |||||||| ||||||||||| ||||| |||||||| |||  ||||||  | || |    
T  39444 ttctagatggaaaacatctccacgagggacttccactaggatattaatgtttgcttacaatgtgaatacaataattccttgaaacaaccctatttcttca 39543  T
Q  225 attcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    |||| ||||||| ||||||| ||||||| ||||| ||| |||||||||| ||| ||||||||    
T  39544 attcctatgcaatcactccctcaatcttcaaataacctctgaaattggtactttttgatgtc 39605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 38 - 286
Target Start/End: Original strand, 35043 - 35290
Alignment:
Q  38 caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||||||||||||| || ||||||| |  |||||||||||| ||||||||||||||| || |||| |||||||||||| ||||||| || | |||||||    
T  35043 caaaattaaagaggatagagaagagagaaaacaccgagattt-atagtagttcaccctgtcatccttgcttcgggctacgtctactcctcctgatggaaa 35141  T
Q  138 acgtctccaccaaggacttccactagaata-tgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaa 236  Q
    | | |||||||||||||||||| ||||||| | |||||||||||  ||||||||||||||||| |||| ||| |||||||| | || ||||| |||  ||    
T  35142 atgcctccaccaaggacttccattagaatattaaatgtttgatttgaatgtgattacaagaatcccttgaaactaccctagttcttcaattcctatctaa 35241  T
Q  237 ccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
     ||||||||||||||| ||| ||| |||||||| | ||||| ||||||||    
T  35242 tcactcccccaatcttcaaa-accttttgaaatcgatgctttttgatgtc 35290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 30 - 286
Target Start/End: Original strand, 42368831 - 42369086
Alignment:
Q  30 acaattagcaaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcat 129  Q
    ||||||| ||||||||||||||| | ||||||||||||| ||  |||||| |||||||||||||||||  ||||||||||||| |||||||||||||| |    
T  42368831 acaattatcaaaattaaagaggataaggaagagaaacgatacaaagattt-atagtagttcacccttttgtcctcgcttcgggatacatctactcttctt 42368929  T
Q  130 tatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattca 229  Q
      ||||||||  |||| |||||||||| ||||| ||||||||||||  |||||||||||||||||||| |||||| ||  |||||||| | || ||  |     
T  42368930 ggtggaaaactcctccgccaaggactttcactaaaatatgaatgttgaattacaatgtgattacaagagttccttgaagctaccctagttcttcaaccct 42369029  T
Q  230 tatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    |||  || ||||||||||| ||| |||||||||||||| || |||||||||| ||||    
T  42369030 tatataaacactcccccaaacttcaaataccctttgaattttgtgcttcttgttgtc 42369086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 286
Target Start/End: Complemental strand, 25922262 - 25922003
Alignment:
Q  30 acaattagcaaaattaaagagga-aagggaagaga-aacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttc 127  Q
    ||||||| ||||||||||||||| ||||||| ||| |||| |||||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||    
T  25922262 acaattatcaaaattaaagaggataagggaaaagagaacggcaccgagattttatagcagttcacccttttgtcctcgcttcgggctacgtctactcttc 25922163  T
Q  128 attatggaaaacgtctccaccaaggacttccact-agaatatgaatgtttgattac-aatgtgattacaagaattccttcaaattaccctagctatttaa 225  Q
     |  || |||||| |||||||||||||||||||| | | ||  |||| |||| ||| ||||||||||||||| |||||| ||| ||  |||| | || ||    
T  25922162 ttggtgtaaaacgcctccaccaaggacttccactaatagtaacaatg-ttgaatacaaatgtgattacaagagttccttgaaactattctagttcttcaa 25922064  T
Q  226 ttcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
      | |||  |||||||||| ||| ||| ||||| |||||||| ||||||||||||||||||    
T  25922063 cccctataaaaccactccctcaaacttcaaataacctttgaatttggtgcttcttgatgtc 25922003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 39 - 286
Target Start/End: Original strand, 14889303 - 14889549
Alignment:
Q  39 aaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaa 138  Q
    ||||||||| |||| || ||||||| | ||||||||||||| ||| | ||||||  |||| ||||||||||| ||||| || ||||||| | ||||||||    
T  14889303 aaaattaaaaaggatagagaagagagaagacaccgagattt-ataatggttcactatttcgtcctcgcttcgagctacctccactcttcttgatggaaaa 14889401  T
Q  139 cgtctccaccaaggacttccactagaatat-gaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaac 237  Q
    |  |||||| ||| ||||| | |||||||| |||||||||| ||||| ||||||||||||||||||| ||| |||| ||| | || ||||| |||||||     
T  14889402 cacctccactaagaacttctaatagaatatagaatgtttgaatacaacgtgattacaagaattccttgaaactaccttagttcttcaattcctatgcaat 14889501  T
Q  238 cactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    |||| ||  |||||| || |||||| | |||||||||||||||||||||    
T  14889502 cact-ccataatcttcaactaccctctaaaattggtgcttcttgatgtc 14889549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 286
Target Start/End: Complemental strand, 24508048 - 24507788
Alignment:
Q  30 acaattagcaaaattaaagaggaaagggaagaga-aacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttc 127  Q
    ||||||| ||||||||||||||| | |||| | | ||| ||||||||||||| |||||||||| ||||||| |||||| |||||||||| ||||| ||||    
T  24508048 acaattatcaaaattaaagaggataaggaaaatagaacaacaccgagatttttatagtagttcgccctttcgtcctcgtttcgggctacgtctacacttc 24507949  T
Q  128 attatggaaaacgtctccaccaaggacttccact-agaatatgaatgtttgattac-aatgtgattacaagaattccttcaaattaccctagctatttaa 225  Q
     | ||| |||||   ||||||||||||||||||| | | ||  ||||||  ||||| ||||||||||||||| |||||| ||| || ||| | | || ||    
T  24507948 ttgatgaaaaacacttccaccaaggacttccactaatagtaacaatgttgaattacaaatgtgattacaagagttccttaaaactatcctggttcttcaa 24507849  T
Q  226 ttcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
      | |||| |||||||||| ||| ||| |||||||||||||| ||||||||||||||||||    
T  24507848 cccctatgtaaccactccctcaaacttcaaataccctttgaatttggtgcttcttgatgtc 24507788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 135 - 286
Target Start/End: Original strand, 24697816 - 24697969
Alignment:
Q  135 aaaacgtctccaccaaggacttccactagaa-tatgaatgtttgattacaa-tgtgattacaagaattccttcaaattaccctagctatttaattcatat 232  Q
    ||||||||||||||||||||||||||||  | ||  ||||||  ||||||| ||||||||||||| |||||| ||| |||||||| | || ||  | |||    
T  24697816 aaaacgtctccaccaaggacttccactaatagtaacaatgttgaattacaaatgtgattacaagagttccttgaaactaccctagttcttcaacccctat 24697915  T
Q  233 gcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    | |||||||||||||| ||| |||||||||||||| ||||||||||||||||||    
T  24697916 gtaaccactcccccaaacttcaaataccctttgaatttggtgcttcttgatgtc 24697969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 16974234 - 16974172
Alignment:
Q  65 acgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactctt 126  Q
    |||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||    
T  16974234 acgacaccgagatttttatattagttcaccctttcgtccttgcttcgggctacatctactctt 16974172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 26883682 - 26883597
Alignment:
Q  76 attttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttccacta 162  Q
    ||||||||||||||  ||||||| ||||||||||||| ||| |||||||||| | || |||||||| || | | |||||||||||||    
T  26883682 attttatagtagttt-ccctttcgtcctcgcttcggggtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 26883597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 1343441 - 1343526
Alignment:
Q  77 ttttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttccacta 162  Q
    |||||||||||||| | ||||  ||||||||| | || ||||||||||||| |  || |||||  |||||||||||||||||||||    
T  1343441 ttttatagtagttcgctcttttgtcctcgctttgagccacatctactcttcttggtgaaaaacacctccaccaaggacttccacta 1343526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 12755352 - 12755289
Alignment:
Q  45 aaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttc 109  Q
    |||||||||||||||||||||||||| | ||| |||||||||||||  | |||| ||||||||||    
T  12755352 aaagaggaaagggaagagaaacgacaacaaga-tttatagtagttcctcttttcgtcctcgcttc 12755289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 13885825 - 13885773
Alignment:
Q  230 tatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttga 282  Q
    ||||||| ||||||||||| ||| ||||| |||||||| |||||||| |||||    
T  13885825 tatgcaaacactcccccaaacttcaaataacctttgaatttggtgctccttga 13885773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 94 - 286
Target Start/End: Original strand, 16647784 - 16647977
Alignment:
Q  94 ctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttccactagaatat-gaatgtttgattacaatgtgatta 192  Q
    ||||| ||||||||||| ||||| || ||||||| | |||||||| |||||||||||||||||||| || ||||| |||||||||| |||||||||||||    
T  16647784 ctttcgtcctcgcttcgagctacctccactcttcttgatggaaaatgtctccaccaaggacttccaataaaatattgaatgtttgaatacaatgtgatta 16647883  T
Q  193 caagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||| |||||||| ||| || || || | || ||||| ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  16647884 caaaaattccttgaaactagcccagttcttcaattcctatgcaatcactcccccaatcttcaaataacctttgaaattggtgcttcttgatgtc 16647977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 24374693 - 24374835
Alignment:
Q  40 aaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaac 139  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||| |||||||||  |  || |||||    
T  24374693 aaattaaagaggaaaggggagagaaacgacaccgagattttatagtagttctccctttcgtcctcccttcggggtacgtctactctttttggtgaaaaac 24374792  T
Q  140 gtctccaccaaggacttccactagaatatgaatgtttgattaca 183  Q
    ||| ||||||||||||||||||| ||| ||||||| ||||||||    
T  24374793 gtcaccaccaaggacttccactaaaat-tgaatgtatgattaca 24374835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 17125183 - 17125308
Alignment:
Q  40 aaattaaagaggaaagggaagaga-aacgacaccgagatttt-atagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||||||||||| | |||| ||| ||||||||||| ||||| | ||| |||||||||||| ||||||||||||||||  || |||||||||  || |||    
T  17125183 aaattaaagaggataaggaaaagagaacgacaccgacatttttaaagttgttcaccctttcgtcctcgcttcgggctatgtcaactcttcatggtgaaaa 17125282  T
Q  138 acgtctccaccaaggacttccactag 163  Q
    ||| ||||| ||||| | ||||||||    
T  17125283 acgcctccatcaaggtcatccactag 17125308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 22741782 - 22741620
Alignment:
Q  118 tctactcttcattatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattacaatgt---gattacaagaattccttcaaattaccc 214  Q
    |||||||||| | || ||||||||| | | |||| |||||||||| ||| ||||||||||||||||||||   |||||||| || | |||||| ||||||    
T  22741782 tctactcttcttgatagaaaacgtcgctatcaagaacttccactaaaat-tgaatgtttgattacaatgttgtgattacaataacttcttcaa-ttaccc 22741685  T
Q  215 tagctattt--aattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttctt 280  Q
    |   |||||  |||||  |||||||||   |||||||||| ||||||||||||||||||||| |||||    
T  22741684 t---tattttcaattcccatgcaaccataaccccaatcttcaaataccctttgaaattggtgtttctt 22741620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 24175511 - 24175625
Alignment:
Q  45 aaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctc 144  Q
    ||||||||||||||||||||  ||| ||| || ||||| ||| ||| ||||||| || | |||||||| |||||||| ||||| | || |||||| ||||    
T  24175511 aaagaggaaagggaagagaa--gacgccg-gaatttattgtacttccccctttcatctttgcttcggggtacatctattcttcttgatagaaaacatctc 24175607  T
Q  145 caccaaggacttccacta 162  Q
     | ||| |||||||||||    
T  24175608 tatcaaagacttccacta 24175625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 286
Target Start/End: Complemental strand, 844 - 598
Alignment:
Q  38 caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||||||||||||| |  ||||||| |  ||||| |||||| |||||||||||||||| | ||||  ||||| ||||| |||||||||| | |||||||    
T  844 caaaattaaagaggataaagaagagagaaaacaccaagattt-atagtagttcacccttccgtccttacttcgagctacgtctactcttcttgatggaaa 746  T
Q  138 acgtctccaccaaggacttccactagaata-tgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaa 236  Q
    |||  ||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||| |||| ||| | || | ||| |||||||    
T  745 acgcatccaccaaggacttccactagaatattgaatgtttgattaccgtgtgattacaagaattccttgaaactaccttagttcttcagttcctatgcaa 646  T
Q  237 ccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
     |||||||| |||||| ||  ||| ||||||||| |||||||||||||||    
T  645 tcactccccgaatcttcaa--accttttgaaattcgtgcttcttgatgtc 598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 25931074 - 25930948
Alignment:
Q  78 tttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaaggacttccactagaatatgaatgtttg 177  Q
    ||||||||||||| ||||||| |||| ||||||| |||| |||||||||| | |||||||| | ||||||||||||||||||||||||||||||||||||    
T  25931074 tttatagtagttcgccctttcgtccttgcttcggcctacgtctactcttcttgatggaaaatgactccaccaaggacttccactagaatatgaatgtttg 25930975  T
Q  178 attacaatgtgattacaagaattcctt 204  Q
    |||||| ||| ||||||||||||||||    
T  25930974 attacagtgtaattacaagaattcctt 25930948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 16598793 - 16598661
Alignment:
Q  139 cgtctccaccaaggacttccactagaatatgaatgtttgattacaatgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaacc 238  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| |||  ||||||| | || ||||| ||||||| |    
T  16598793 cgtctccaccaaggacttccactagaatattaatgtttgattacactgtgattacatgaattccttgaaacgaccctagttcttcaattcctatgcaatc 16598694  T
Q  239 actcccccaatctttaaataccctttgaaattg 271  Q
    |||||||||||||| ||||| ||||||||||||    
T  16598693 actcccccaatcttcaaataacctttgaaattg 16598661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 24454415 - 24454572
Alignment:
Q  26 atacacaattag-caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactc 124  Q
    |||||||||||  ||||||||||||||| || ||||||| |  |||||||||||| |||||||||||||||||| || |||||||||||||| |||||||    
T  24454415 atacacaattaatcaaaattaaagaggatagagaagagagagaacaccgagattt-atagtagttcaccctttcgtcttcgcttcgggctacgtctactc 24454513  T
Q  125 ttcattatggaaaacgtctccaccaaggacttccactagaatatgaatgtttgattaca 183  Q
    ||| | ||| |||| | ||||||||||||| |||||||||||  |||||||||||||||    
T  24454514 ttcttgatgcaaaatgcctccaccaaggacatccactagaattcgaatgtttgattaca 24454572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 279
Target Start/End: Original strand, 22728054 - 22728287
Alignment:
Q  45 aaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctc 144  Q
    ||||| ||||||  |||||||| ||| |||||||| ||||||| || ||||||| || |||||||||| |||||||||||||| | || ||||| |||||    
T  22728054 aaagaagaaaggttagagaaacaacatcgagattt-atagtagctccccctttcctcttcgcttcggggtacatctactcttcttgatagaaaaggtctc 22728152  T
Q  145 caccaaggacttccactagaatatgaatgtttgattacaa---tgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccac- 240  Q
     | ||| ||||| ||||| ||| ||||  |||||||||||   |||||||||||||| |||||| ||||||||||  | || |||||||||||||||||     
T  22728153 tatcaaagactttcactaaaat-tgaa-atttgattacaatgttgtgattacaagaactccttc-aattacccta-attttcaattcatatgcaaccaca 22728248  T
Q  241 tcccccaatctttaaataccctttgaaattggtgcttct 279  Q
     |||||||| || || || ||||||||||||||| ||||    
T  22728249 acccccaattttcaagtaacctttgaaattggtgattct 22728287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 280
Target Start/End: Original strand, 24005341 - 24005567
Alignment:
Q  53 aagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccaccaagg 152  Q
    |||||||||||||||||||| | |||| ||||| |||| |||| || |||| |||| | | |||||| ||||||| | |  |||||||||||   |||||    
T  24005341 aagggaagagaaacgacaccaaaattt-atagtggttctccctctcgtccttgctttgcgatacatccactcttcttgacagaaaacgtctctttcaagg 24005439  T
Q  153 acttccactagaatatgaatgtttgattacaa---tgtgattacaagaattccttcaaattaccctagctatttaattcatatgcaaccactcccccaat 249  Q
    |||||||||| ||| |||||||||||||||||   |||||||||||||| |||||| ||||| || |  | || ||||| |||||||||| | ||| |||    
T  24005440 acttccactaaaat-tgaatgtttgattacaattttgtgattacaagaactccttc-aattatcc-aaattttcaattcctatgcaaccattacccaaat 24005536  T
Q  250 ctttaaataccctttgaaattggtgcttctt 280  Q
    ||| || ||||| |||||||||||| |||||    
T  24005537 cttcaagtaccccttgaaattggtgtttctt 24005567  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 14881746 - 14881609
Alignment:
Q  48 gaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaaacgtctccac 147  Q
    |||||||||||||||||| ||||||||||  |||||||||| | ||||||| |||| | |||||  ||| |||||||||| | || ||||| || || |     
T  14881746 gaggaaagggaagagaaatgacaccgaga-attatagtagtgccccctttcatccttgtttcggagtacgtctactcttcttgatagaaaatgtatctat 14881648  T
Q  148 caaggacttccactagaatatgaatgtttgattacaatgt 187  Q
    ||||||||| ||||| ||| | ||||||||||||||||||    
T  14881647 caaggactttcactaaaat-taaatgtttgattacaatgt 14881609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 286
Target Start/End: Complemental strand, 25929695 - 25929619
Alignment:
Q  210 taccctagctatttaattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    |||||||| | || ||||||||||||| |||||||||||| || |||||||||||||| | | ||||||||||||||    
T  25929695 taccctagttcttcaattcatatgcaatcactcccccaattttcaaataccctttgaactcgatgcttcttgatgtc 25929619  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 9337916 - 9337996
Alignment:
Q  30 acaattagcaaaattaaagaggaaagggaagagaaacga-caccgagatttt-atagtagttcaccctttcttcctcgctt 108  Q
    ||||||| |||||||||| |||| | ||||||||||  | |||||||||||| ||||||||| |||||||| || ||||||    
T  9337916 acaattatcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagtttaccctttcgtcgtcgctt 9337996  T

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Target: scaffold0032 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 184
Target Start/End: Complemental strand, 70814 - 70668
Alignment:
Q  38 caaaattaaagaggaaagggaagagaaacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctacatctactcttcattatggaaa 137  Q
    ||||||||||||||  ||  |||||| |  |||||||||||| |||||||||||||||||| ||||| | ||||||||| | |||||||| | | |||||    
T  70814 caaaattaaagaggctagacaagagagaaaacaccgagattt-atagtagttcaccctttcgtcctcacctcgggctacgtatactcttcttgaaggaaa 70716  T
Q  138 acgtctccaccaaggacttccactagaata-tgaatgtttgattacaa 184  Q
    ||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  70715 acgcctccaccaaggacttccactagaatattgaatgtttgcttacaa 70668  T

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Target: scaffold0032; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 70639 - 70578
Alignment:
Q  224 aattcatatgcaaccactcccccaatctttaaataccctttgaaattggtgcttcttgatgtc 286  Q
    ||||| ||||||| ||||||||||||||| ||| ||| ||| |||||| ||||||||||||||    
T  70639 aattcctatgcaatcactcccccaatcttcaaa-accttttaaaattgatgcttcttgatgtc 70578  T

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Target: scaffold0711 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 4448 - 4361
Alignment:
Q  30 acaattagcaaaattaaagaggaaagggaagaga-aacgacaccgagattttatagtagttcaccctttcttcctcgcttcgggctac 116  Q
    |||||||  |||||||||||||| | |||| ||| |||||||||    ||||||||| |||||||||||| |||| ||||||||||||    
T  4448 acaattaaaaaaattaaagaggataaggaaaagagaacgacaccatatttttatagttgttcaccctttcgtccttgcttcgggctac 4361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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