View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_44 (Length: 293)
Name: NF8919_low_44
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 13973407 - 13973551
Alignment:
| Q |
1 |
tctcagcagcctcggcaaatttcttcatagattcgggattaatcgaaccgacaagaagagggtcaatgattttatcaagcaaaccctttctcttccattg |
100 |
Q |
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| T |
13973407 |
tctcagcagcctcggcaaatttcttcatagattcgggattaatcgaaccgacaagaagagggtcaatgattttatcaagcaaaccctttctcttccattg |
13973506 |
T |
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| Q |
101 |
catagcccaatcagctaagttaacttgttctctaggtaactgagg |
145 |
Q |
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| T |
13973507 |
catagcccaatcagctaagttaacttgttctctaggtaactgagg |
13973551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 141 - 282
Target Start/End: Complemental strand, 13973291 - 13973150
Alignment:
| Q |
141 |
tgaggctaaatctgctgctgttgttgttcctacttcacctgctcctcctactacacccccctctgttactgattgtccccccacacctcctcaacaagaa |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13973291 |
tgaggctaaatctgctgctgttgttgttcctacttcacctgctcctcctactacacccccctctgttactgattgtccccccacacctcctcaacaagaa |
13973192 |
T |
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| Q |
241 |
gtaaataatagtcctgctgaagttcaagctattgatgtccat |
282 |
Q |
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| T |
13973191 |
gtaaataatagtcctgctgaagttcaagctattgatggccat |
13973150 |
T |
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