View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_45 (Length: 282)
Name: NF8919_low_45
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 9399545 - 9399802
Alignment:
| Q |
14 |
aagaagtattaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttttactgtggatcatataaaattgtgtgt |
113 |
Q |
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| T |
9399545 |
aagaaatatcaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttttactgtggatcatataaaattgtgtgt |
9399644 |
T |
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| Q |
114 |
tc-----aatatacttcaatatattgttcttnnnnnnnnnncttctagattttttagtaagaaaaaatccaaaacaaacgtttgagcattgat-tacgaa |
207 |
Q |
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| T |
9399645 |
tcaatataatatacttcaatatattgttctt-aaaaaaatacttctagattttttagtaagaaaaaatccaaaacaaacatttgagcattgatatacgac |
9399743 |
T |
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| Q |
208 |
ttgtacataaaagaaagaagtagcgataaatttaattaccataatcaaggccttgatgt |
266 |
Q |
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| T |
9399744 |
ttgtacataaaagaaagaagtagagataaatttaattaccataatcaaggccttgatgt |
9399802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 9382050 - 9382129
Alignment:
| Q |
7 |
ctcattgaagaagtattaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttt |
86 |
Q |
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| T |
9382050 |
ctcatagatgaaatatcaactcatcaatgaatatgtatcgaagggaatatttgttattcaaatccgtaccaattaagttt |
9382129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 9382283 - 9382333
Alignment:
| Q |
216 |
aaaagaaagaagtagcgataaatttaattaccataatcaaggccttgatgt |
266 |
Q |
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| T |
9382283 |
aaaagaaggaagtagggataaatttaattaccataatcaaggccttgatgt |
9382333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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