View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8919_low_51 (Length: 248)
Name: NF8919_low_51
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9096513 - 9096276
Alignment:
| Q |
1 |
aaaggaatacataaacatggaaaatgggaactaggtcagatctttttaaaaagaaataagcctatagttgggcaattttaacctacttctgatgtattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9096513 |
aaaggaatacataaacatggaaaatgggaactaggtcaaatctttttaaaaagaaatatgcctatagttgggcaattttaacctacttctgatgtattct |
9096414 |
T |
|
| Q |
101 |
atgttaatggaatcagggagggaaatgaacgaaacaaaagcagacatagctaagcctatgttnnnnnnncttaaaactaatccggtatttttgtcaaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
9096413 |
atgttaatggaatcagggagggaaatgaaccaaacaaaagcagacatagctaagtctatgttaaaaaaacttaaaactaatctggtatttttgtcaaaca |
9096314 |
T |
|
| Q |
201 |
taaataaccaaaaaataatattttgctttatattaaca |
238 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9096313 |
taaatgaccaaaaaataatattttgctttatattaaca |
9096276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University