View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8919_low_53 (Length: 240)

Name: NF8919_low_53
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8919_low_53
NF8919_low_53
[»] chr5 (12 HSPs)
chr5 (27-223)||(31949272-31949468)
chr5 (1-89)||(27554282-27554370)
chr5 (6-112)||(26675240-26675346)
chr5 (6-112)||(26946848-26946954)
chr5 (7-112)||(27001358-27001463)
chr5 (33-89)||(14468821-14468877)
chr5 (27-103)||(17676566-17676642)
chr5 (2-109)||(37181084-37181190)
chr5 (28-74)||(17676787-17676833)
chr5 (30-112)||(37149983-37150065)
chr5 (1-49)||(23159225-23159273)
chr5 (33-89)||(32503290-32503346)
[»] chr3 (9 HSPs)
chr3 (1-112)||(30843770-30843881)
chr3 (5-89)||(40619160-40619244)
chr3 (2-100)||(26499952-26500050)
chr3 (1-89)||(621825-621913)
chr3 (1-110)||(51889788-51889897)
chr3 (1-79)||(14984638-14984716)
chr3 (8-112)||(12832068-12832172)
chr3 (16-91)||(43838804-43838879)
chr3 (33-89)||(37326825-37326879)
[»] chr4 (20 HSPs)
chr4 (1-112)||(30623675-30623786)
chr4 (1-89)||(50384402-50384488)
chr4 (8-91)||(51234279-51234362)
chr4 (28-89)||(17381543-17381604)
chr4 (1-86)||(31903451-31903536)
chr4 (8-89)||(46804807-46804888)
chr4 (15-110)||(12034413-12034508)
chr4 (1-89)||(11840000-11840088)
chr4 (18-89)||(1758351-1758422)
chr4 (1-60)||(29223379-29223438)
chr4 (4-81)||(8170759-8170836)
chr4 (33-89)||(971897-971953)
chr4 (33-89)||(17381336-17381392)
chr4 (1-56)||(972073-972128)
chr4 (36-91)||(2350919-2350974)
chr4 (50-101)||(5979568-5979619)
chr4 (34-89)||(12163192-12163247)
chr4 (38-109)||(12922198-12922269)
chr4 (12-112)||(4161651-4161751)
chr4 (1-49)||(27860743-27860791)
[»] chr8 (9 HSPs)
chr8 (8-89)||(21601959-21602040)
chr8 (1-112)||(23357351-23357462)
chr8 (1-66)||(2988318-2988383)
chr8 (16-89)||(33508468-33508541)
chr8 (1-89)||(21600604-21600691)
chr8 (8-61)||(6394049-6394102)
chr8 (30-100)||(18080442-18080512)
chr8 (1-47)||(21216398-21216444)
chr8 (33-62)||(21145448-21145477)
[»] chr1 (14 HSPs)
chr1 (5-102)||(27900658-27900755)
chr1 (1-85)||(8779008-8779092)
chr1 (18-89)||(6727979-6728050)
chr1 (1-112)||(36144814-36144924)
chr1 (1-84)||(45392489-45392572)
chr1 (1-107)||(34826831-34826936)
chr1 (28-89)||(27463777-27463838)
chr1 (2-73)||(5529674-5529745)
chr1 (2-89)||(19464267-19464354)
chr1 (32-89)||(31134721-31134778)
chr1 (33-112)||(39162435-39162514)
chr1 (14-88)||(39329975-39330049)
chr1 (15-103)||(14926322-14926410)
chr1 (51-91)||(38340485-38340525)
[»] chr7 (13 HSPs)
chr7 (28-112)||(12849711-12849795)
chr7 (1-112)||(1344575-1344685)
chr7 (27-74)||(14669300-14669347)
chr7 (1-89)||(26904997-26905085)
chr7 (15-89)||(32996482-32996556)
chr7 (27-103)||(14669489-14669565)
chr7 (33-73)||(40355068-40355108)
chr7 (13-49)||(41870698-41870734)
chr7 (19-94)||(10228747-10228822)
chr7 (36-89)||(7735351-7735404)
chr7 (32-112)||(25688984-25689064)
chr7 (37-85)||(27376489-27376537)
chr7 (2-90)||(39129201-39129289)
[»] scaffold0086 (1 HSPs)
scaffold0086 (1-109)||(21823-21931)
[»] chr2 (4 HSPs)
chr2 (8-89)||(34883950-34884031)
chr2 (1-89)||(6788452-6788540)
chr2 (32-110)||(40124295-40124373)
chr2 (37-110)||(18903171-18903244)
[»] chr6 (9 HSPs)
chr6 (2-52)||(26369088-26369138)
chr6 (32-90)||(19264719-19264777)
chr6 (16-110)||(25085066-25085160)
chr6 (27-104)||(515764-515841)
chr6 (3-89)||(24084630-24084716)
chr6 (33-110)||(515990-516067)
chr6 (1-66)||(18354722-18354787)
chr6 (5-41)||(20564741-20564777)
chr6 (8-100)||(31142155-31142247)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-91)||(329016-329092)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 31949272 - 31949468
Alignment:
Q  27 gtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattactcatggaacaaaaatgac 126  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| ||  |||||| ||| ||||| | ||||||||||||||||||| ||||||||||||    
T  31949272 gtcagggactattttgactaacatagtgcacaatcagagactctcttaaaattttaatatattaagagactattgtgattactcatgcaacaaaaatgac 31949371  T
Q  127 tatacgcctaaaataaaccaccaacatcgtggatcttaacaattatcaacctgcttcaacaagcagtatagaattctgttctagcacccttgagtaa 223  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31949372 tatacgcctaaaataaacaaccaacatcatggatcttaacaattatcaacctgcttcaacaagcactatagaattctgttctagcacccttgagtaa 31949468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27554282 - 27554370
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||||||||| |||||||||| | ||| ||||||||| ||||||| ||||||||||||  || | |||| |||||||||||||||    
T  27554282 tgtgagcattgagatattattttagcgacaaagactattttaactaacagagtgcacaattaaggattattttagaattttgatacatt 27554370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 26675240 - 26675346
Alignment:
Q  6 gcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgat 105  Q
    ||||||| |||||||||||| ||||  ||||||||||| ||||| | |||||||| | ||||| |||| |||| |||||||||||| | | |||||||||    
T  26675240 gcattgaaagattattttagtgtcatagactattttgagtaacagaatgcacaatcaaagactattttagaatattgatacattaaaagattattgtgat 26675339  T
Q  106 tactcat 112  Q
    || ||||    
T  26675340 tagtcat 26675346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 26946848 - 26946954
Alignment:
Q  6 gcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgat 105  Q
    ||||||| |||||||||||| ||||  ||||||||||| ||||| | |||||||| | ||||| |||| |||| |||||||||||| | | |||||||||    
T  26946848 gcattgaaagattattttagtgtcatagactattttgagtaacagaatgcacaatcaaagactattttagaatattgatacattaaaagattattgtgat 26946947  T
Q  106 tactcat 112  Q
    || ||||    
T  26946948 tagtcat 26946954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 27001358 - 27001463
Alignment:
Q  7 cattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgatt 106  Q
    ||||||||||||| ||||| | ||  ||| ||||||| ||||| |||||||||| ||||||| ||||  |||||||||| ||  | | |||||||||| |    
T  27001358 cattgagagattactttagcgccagagaccattttgagtaacagagtgcacaatcagagactattttaaaattttgatatatcgagagactattgtgact 27001457  T
Q  107 actcat 112  Q
    ||||||    
T  27001458 actcat 27001463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 14468877 - 14468821
Alignment:
Q  33 gactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    ||||||||||| ||||||||||||||||||  |||| ||||| ||||| ||||||||    
T  14468877 gactattttgattaacatagtgcacaattaaggactattttgaaatttcgatacatt 14468821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 17676642 - 17676566
Alignment:
Q  27 gtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtg 103  Q
    ||||||||||| ||||||||||| |||||||||| |   ||| |||| ||||||||||||||| | | |||||||||    
T  17676642 gtcaaggactactttgactaacagagtgcacaatcaagaactattttagaattttgatacattgagagactattgtg 17676566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 37181190 - 37181084
Alignment:
Q  2 gtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattg 101  Q
    |||| ||||||  ||||||||||| ||||  ||||||||||||||||| | |||||||||| ||||| ||||  |||||| ||| ||||| | ||||||     
T  37181190 gtgaacattgatggattattttagcgtcatagactattttgactaacagattgcacaattaaagact-ttttaaaattttaatatattaagagactatta 37181092  T
Q  102 tgattact 109  Q
    ||| ||||    
T  37181091 tgactact 37181084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 17676787 - 17676833
Alignment:
Q  28 tcaaggactattttgactaacatagtgcacaattagagactcttttg 74  Q
    ||||||||| |||||||||||||||| |||||| ||||||| |||||    
T  17676787 tcaaggactcttttgactaacatagttcacaatcagagactattttg 17676833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 37149983 - 37150065
Alignment:
Q  30 aaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattactcat 112  Q
    |||||||||||||||||||| |||||  ||| |  |||| ||||||||||||| ||||||||   |||||||||  |||||||    
T  37149983 aaggactattttgactaacaaagtgcctaatgaacgactattttggaattttgctacattaaaggactattgtggctactcat 37150065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23159225 - 23159273
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaaca 49  Q
    |||||||||||| | |||||||||| ||||| ||||||||| |||||||    
T  23159225 tgtgagcattgaaaaattattttagcgtcaaagactattttaactaaca 23159273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 32503346 - 32503290
Alignment:
Q  33 gactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    ||||||||||| || || |||||||||||||||| | ||||| |||| |||||||||    
T  32503346 gactattttgattagcacagtgcacaattagagattattttgaaattatgatacatt 32503290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 30843770 - 30843881
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactatt 100  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||| | ||||||    
T  30843770 tgtgagcattgagagattattttagcgtcagggactattttgattaacaaagtgcacaatcagagactattttggaattttgatacattaagagactatt 30843869  T
Q  101 gtgattactcat 112  Q
    |||| |||||||    
T  30843870 gtgactactcat 30843881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 40619160 - 40619244
Alignment:
Q  5 agcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||||| || ||||||| ||||| ||||||||||| |||||||||||||||| ||||||| ||||  ||||||||||||||    
T  40619160 agcattgagaaataattttagcgtcaaagactattttgaataacatagtgcacaatcagagactattttaaaattttgatacatt 40619244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 26499952 - 26500050
Alignment:
Q  2 gtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactatt 100  Q
    ||||| ||||||| |||||||||| ||||||||||||||||||||| | |||||| ||||| ||||| ||||  |||||| ||||||||| | ||||||    
T  26499952 gtgagtattgagaaattattttagcgtcaaggactattttgactaaaagagtgcataattatagacttttttaaaattttaatacattaagaaactatt 26500050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 621825 - 621913
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||| ||||||| |||||||||   |||| ||||||||||||||||| |||||||| |||| |||| ||||| ||||||||||||||    
T  621825 tgtgagtattgagatattattttaacatcaaagactattttgactaacaaagtgcacagttagggactattttgaaattttgatacatt 621913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 51889897 - 51889788
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactatt 100  Q
    |||||| |||||||||||||||||| ||||| || |||||||||||||| || ||| ||| |  ||   |||||||||||||||||||| | | ||||||    
T  51889897 tgtgagtattgagagattattttagcgtcaatgattattttgactaacaaagcgcaaaatcaaggatagttttggaattttgatacattgaaagactatt 51889798  T
Q  101 gtgattactc 110  Q
    |||| |||||    
T  51889797 gtgactactc 51889788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 14984638 - 14984716
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaatt 79  Q
    |||||| |||||| |||||| ||||||||| |||||||||||| ||||| |||||||||| || |||| ||||| ||||    
T  14984638 tgtgagtattgagggattatgttagggtcagggactattttgattaacaaagtgcacaatcagggactattttgcaatt 14984716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 12832172 - 12832068
Alignment:
Q  8 attgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgatta 107  Q
    |||||||||||||||||| || |  ||||||||||||||| | ||||||||| ||| |||| ||||  || |||||||||||||   |||||||| ||||    
T  12832172 attgagagattattttagcgtaagagactattttgactaagagagtgcacaactagggactattttaaaactttgatacattaagggactattgtaatta 12832073  T
Q  108 ctcat 112  Q
     ||||    
T  12832072 ttcat 12832068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 43838804 - 43838879
Alignment:
Q  16 attattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaa 91  Q
    |||||||||  ||||| ||||||||||||||||| | |||||||| |  |||| ||||  ||||||||||||||||    
T  43838804 attattttaacgtcaaagactattttgactaacaaaatgcacaatcaatgactattttaaaattttgatacattaa 43838879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 37326825 - 37326879
Alignment:
Q  33 gactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    ||||||||||||||||  |||||||||| ||||||| ||||| ||||| ||||||||    
T  37326825 gactattttgactaac--agtgcacaatcagagacttttttgaaatttcgatacatt 37326879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 30623675 - 30623786
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactatt 100  Q
    |||||| ||| |||||||||||||| |||| | |||||||||| ||| | |||||||||| ||||||| ||||  |||||||||||||||| | | ||||    
T  30623675 tgtgagtattaagagattattttagcgtcaggaactattttgattaagagagtgcacaatcagagactgttttaaaattttgatacattaaaagattatt 30623774  T
Q  101 gtgattactcat 112  Q
    ||||||||||||    
T  30623775 gtgattactcat 30623786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 50384488 - 50384402
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||||||| |||||||||||| ||||| |||||||  ||||||||||||||||||| ||||||| ||||| |||||| |||||||    
T  50384488 tgtgagcattgaaagattattttagcgtcaatgactatt--gactaacatagtgcacaatcagagactattttgaaattttaatacatt 50384402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 51234362 - 51234279
Alignment:
Q  8 attgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaa 91  Q
    ||||||| |||||||||| |||| |||||||||||||||||||| |||||||| ||||||| ||||  ||||||||| ||||||    
T  51234362 attgagatattattttagcgtcatggactattttgactaacataatgcacaatgagagactattttaaaattttgatccattaa 51234279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 17381543 - 17381604
Alignment:
Q  28 tcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||||||||||| ||||| |||||||||| || |||| ||||||||||||||||||||    
T  17381543 tcaaggactattttgattaacaaagtgcacaatcagggactattttggaattttgatacatt 17381604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 31903451 - 31903536
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatac 86  Q
    |||||| |||||| ||||||||  | |||| |||||||||||| ||||| ||||||| || ||||||| |||||||||||||||||    
T  31903451 tgtgagtattgagggattatttatgcgtcatggactattttgattaacaaagtgcacgatcagagactattttggaattttgatac 31903536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 46804888 - 46804807
Alignment:
Q  8 attgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||||||||||| | ||||  ||||||||||||||||| |||| ||||| ||||||| ||||  ||||||||||||||    
T  46804888 attgagagattatttttgtgtcagagactattttgactaacaaagtgtacaatcagagactattttaaaattttgatacatt 46804807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 12034508 - 12034413
Alignment:
Q  15 gattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattactc 110  Q
    ||||||||||| ||||  ||||||||||||||||| |||  ||||| ||||||| ||||| |||||||||||||| |   |||||||||| |||||    
T  12034508 gattattttagtgtcagagactattttgactaacaaagtatacaatcagagactattttgcaattttgatacattgagggactattgtgactactc 12034413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 11840000 - 11840088
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||| |||| | ||| ||||||  |||| |||||||||||| ||||| |||||||||| || |||| ||||| ||||||||||||||    
T  11840000 tgtgagtattgggggatgattttaacgtcagggactattttgattaacaaagtgcacaatcagggactattttgaaattttgatacatt 11840088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 1758422 - 1758351
Alignment:
Q  18 tattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||  ||||||||||||||||||||||  ||| |||||| ||| ||| ||||| ||||||||||||||    
T  1758422 tattttaatgtcaaggactattttgactaacgaagtacacaataagaaactattttgaaattttgatacatt 1758351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29223379 - 29223438
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaat 60  Q
    ||||| |||||| |||||||||||| || |  ||||||||||||||||||||||||||||    
T  29223379 tgtgaacattgaaagattattttagcgttagagactattttgactaacatagtgcacaat 29223438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 8170836 - 8170759
Alignment:
Q  4 gagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaatttt 81  Q
    ||||||||||||| ||||||   ||||  ||||||||||||||||| |||||||||| | ||||| ||||| ||||||    
T  8170836 gagcattgagagactattttgacgtcagagactattttgactaacaaagtgcacaatcaaagactattttgaaatttt 8170759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 971953 - 971897
Alignment:
Q  33 gactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    ||||| ||||||||||| |||||||||| | ||||| ||||| ||||||||||||||    
T  971953 gactactttgactaacaaagtgcacaatcaaagactattttgaaattttgatacatt 971897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 17381392 - 17381336
Alignment:
Q  33 gactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    ||||||||||||||||| |||| || || ||||||| ||||| ||||||||||||||    
T  17381392 gactattttgactaacaaagtggactatcagagacttttttgaaattttgatacatt 17381336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 972073 - 972128
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgca 56  Q
    |||||||||||||||||||||||||  ||| |||||||||| ||||| | ||||||    
T  972073 tgtgagcattgagagattattttagcatcacggactattttaactaagagagtgca 972128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 2350974 - 2350919
Alignment:
Q  36 tattttgactaacatagtgcacaattagagactcttttggaattttgatacattaa 91  Q
    |||||||||||||||||||||||||||  |||| ||||  ||||| ||||||||||    
T  2350974 tattttgactaacatagtgcacaattatggactattttaaaatttggatacattaa 2350919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 5979568 - 5979619
Alignment:
Q  50 tagtgcacaattagagactcttttggaattttgatacattaacatactattg 101  Q
    ||||||||||||||||| ||||||| |||||||||||| ||| | |||||||    
T  5979568 tagtgcacaattagagattcttttgaaattttgatacaataaaagactattg 5979619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 12163192 - 12163247
Alignment:
Q  34 actattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    ||||| |||||||||||  |||||||| ||||||| ||||||||||| ||||||||    
T  12163192 actatattgactaacatgatgcacaatcagagactattttggaatttcgatacatt 12163247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 12922269 - 12922198
Alignment:
Q  38 ttttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattact 109  Q
    ||||||||||||| ||||||||| | | ||| ||||| ||||| |||||||| | |||||||||||| ||||    
T  12922269 ttttgactaacatcgtgcacaatcaaaaactattttgaaatttcgatacattgaaatactattgtgactact 12922198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 4161751 - 4161651
Alignment:
Q  12 agagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattactca 111  Q
    |||||||||||||| ||||  |||||||||||| |||| | || | ||| |  |||| ||||| |||||||||||||| |   |||||||||| ||||||    
T  4161751 agagattattttagagtcagagactattttgaccaacagaatgtataatcaaggactattttgaaattttgatacattgaaggactattgtgactactca 4161652  T
Q  112 t 112  Q
    |    
T  4161651 t 4161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27860743 - 27860791
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaaca 49  Q
    ||||| ||||||||||||||||||| ||||  || ||||||||||||||    
T  27860743 tgtgaacattgagagattattttagcgtcagagaatattttgactaaca 27860791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 21602040 - 21601959
Alignment:
Q  8 attgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||| ||||||||||| |||| |||||| |||||||||||  ||||||||| ||||||| ||||||||||||||||||||    
T  21602040 attgagggattattttagtgtcagggactactttgactaacaacgtgcacaatcagagactattttggaattttgatacatt 21601959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 23357351 - 23357462
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactatt 100  Q
    |||||| ||||| |||||||||||| || ||  | |||||||||||||| ||||||||||||   ||||||||| ||||| |||||||||| | | ||||    
T  23357351 tgtgagaattgaaagattattttagcgtaaaaaattattttgactaacagagtgcacaattaagcactcttttgaaatttagatacattaagagattatt 23357450  T
Q  101 gtgattactcat 112  Q
    |||| |||||||    
T  23357451 gtgactactcat 23357462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2988318 - 2988383
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagaga 66  Q
    |||||| ||||| | |||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  2988318 tgtgagtattgaaatattattttagcgtcaatgactattttgactaacatagtgcataattagaga 2988383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 33508541 - 33508468
Alignment:
Q  16 attattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||||| ||||| ||||||||||||||| | ||  || ||| ||||||| ||||||||||||||||||||    
T  33508541 attattttagagtcaaagactattttgactaataaagcacataatcagagactattttggaattttgatacatt 33508468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21600604 - 21600691
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    ||||||||| |||||||||||||||  |||  ||||||||||||| ||| | |||||||| | ||||| |||| |||||||||||||||    
T  21600604 tgtgagcatcgagagattattttagcttcatagactattttgacttacagaatgcacaatcaaagactatttt-gaattttgatacatt 21600691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 6394049 - 6394102
Alignment:
Q  8 attgagagattattttagggtcaaggactattttgactaacatagtgcacaatt 61  Q
    |||||||||||||||||| ||||| |||||||| || ||||| |||||||||||    
T  6394049 attgagagattattttagcgtcaaagactatttcgattaacaaagtgcacaatt 6394102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 18080442 - 18080512
Alignment:
Q  30 aaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactatt 100  Q
    |||||||||||| | |||||||||||||||| | | | | ||||| |||||||||||||||| | ||||||    
T  18080442 aaggactattttcaataacatagtgcacaatcaaaaaatattttgaaattttgatacattaagagactatt 18080512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21216398 - 21216444
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaa 47  Q
    |||||| ||||||||||||||||||||  || |||||||||||||||    
T  21216398 tgtgagtattgagagattattttagggataatgactattttgactaa 21216444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 21145477 - 21145448
Alignment:
Q  33 gactattttgactaacatagtgcacaatta 62  Q
    ||||||||||||||||||||||||||||||    
T  21145477 gactattttgactaacatagtgcacaatta 21145448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 27900755 - 27900658
Alignment:
Q  5 agcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgt 102  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  | |||||||||| || |||| ||||  |||||||||||||||| | ||||||||    
T  27900755 agcattgagagattattttagcgtcaaagactattttgactattagagtgcacaatcagggactattttaaaattttgatacattaagagactattgt 27900658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 8779092 - 8779008
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgata 85  Q
    |||||||||||||||||||||||||   ||  ||||||||| ||||||| |||||||||| ||| ||| ||||| ||||||||||    
T  8779092 tgtgagcattgagagattattttagcaccagagactattttaactaacaaagtgcacaatcagaaactattttgaaattttgata 8779008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 6727979 - 6728050
Alignment:
Q  18 tattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||  ||||| ||||||||||||||||||||||||||||   ||||| ||||||||||||||| ||||    
T  6727979 tattttaaagtcaaagactattttgactaacatagtgcacaatggaagactattttggaattttgattcatt 6728050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 36144924 - 36144814
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactatt 100  Q
    |||||| ||||||||||||||||||  |||| || |||||||| ||||| | |||||||| | ||| | ||||||||||||||||||||   | | ||||    
T  36144924 tgtgagtattgagagattattttagcctcaaagattattttgattaaca-aatgcacaatcaaagattattttggaattttgatacattgggagagtatt 36144826  T
Q  101 gtgattactcat 112  Q
    ||||||||||||    
T  36144825 gtgattactcat 36144814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 45392489 - 45392572
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgat 84  Q
    |||||||||| |||||||||||||| ||||  |||||||||||||| || |||||||||| |  |||| |||| ||||||||||    
T  45392489 tgtgagcattaagagattattttagtgtcatagactattttgactatcagagtgcacaatcaaggactattttagaattttgat 45392572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 34826936 - 34826831
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactatt 100  Q
    |||||||||| |||||||||||||  ||||| ||||||||||||||||| | |||||||| || || | ||||  |||||||||||||| |   ||||||    
T  34826936 tgtgagcattaagagattattttaacgtcaaagactattttgactaacagaatgcacaatcagtga-tattttaaaattttgatacattgaaggactatt 34826838  T
Q  101 gtgatta 107  Q
    |||||||    
T  34826837 gtgatta 34826831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 27463838 - 27463777
Alignment:
Q  28 tcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||| ||||||||||||||||| |||||| ||||||||||| |||| ||||||| |||||||    
T  27463838 tcaaagactattttgactaacaaagtgcaaaattagagactattttagaattttaatacatt 27463777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 5529745 - 5529674
Alignment:
Q  2 gtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactctttt 73  Q
    ||||| ||||||| |||||||||| ||||| ||||||||||||||||| |  ||||||| ||||||| ||||    
T  5529745 gtgagtattgagatattattttagtgtcaaagactattttgactaacaaatcgcacaatcagagactatttt 5529674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 19464354 - 19464267
Alignment:
Q  2 gtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    ||||||||||||| |||||||||| ||||  ||||||||||||||||  ||||  |||| ||||||  ||||  ||||||||||||||    
T  19464354 gtgagcattgagatattattttagtgtcagagactattttgactaacggagtgttcaatcagagaccatttttaaattttgatacatt 19464267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 31134721 - 31134778
Alignment:
Q  32 ggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||||||| |||||||||||||||| |   |||||||||||||||| |||||||    
T  31134721 ggactattttgattaacatagtgcacaatcaatcactcttttggaatttttatacatt 31134778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 39162514 - 39162435
Alignment:
Q  33 gactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattactcat 112  Q
    ||||||||||||||||||| ||| |||| | | ||| ||||| |||||  ||||||| |  |||||||||||||||||||    
T  39162514 gactattttgactaacataatgcgcaatcaaaaactattttgaaatttcaatacattgaagtactattgtgattactcat 39162435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 39330049 - 39329975
Alignment:
Q  14 agattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacat 88  Q
    |||||||||||| || |  ||||||||||||||||||| |||| |||||| || | ||||  |||||||||||||    
T  39330049 agattattttagtgttagtgactattttgactaacataatgcataattagtgaatattttaaaattttgatacat 39329975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 14926410 - 14926322
Alignment:
Q  15 gattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtg 103  Q
    ||||||||||   |||| ||||| |||||||||||||||||||||| ||  ||| ||||  |||||| ||||||| | | |||||||||    
T  14926410 gattattttaacatcaatgactactttgactaacatagtgcacaatcagtaactattttaaaattttcatacattcagagactattgtg 14926322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 38340485 - 38340525
Alignment:
Q  51 agtgcacaattagagactcttttggaattttgatacattaa 91  Q
    |||||||||| | ||||||||||||||||| ||||||||||    
T  38340485 agtgcacaatcaaagactcttttggaatttcgatacattaa 38340525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 12849711 - 12849795
Alignment:
Q  28 tcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattactcat 112  Q
    |||| |||||||| |||||||| |||||||||| ||||||| ||||| |||||||||||||||| | |||||||||| |||||||    
T  12849711 tcaaagactatttcgactaacaaagtgcacaatcagagactattttgtaattttgatacattaaaagactattgtgactactcat 12849795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 1344575 - 1344685
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactatt 100  Q
    |||||| |||||||||||||||||| ||||  ||||||||||||||||| |||||  ||| | |||||  |||| |||||||||||||| |   ||||||    
T  1344575 tgtgagtattgagagattattttagcgtcatagactattttgactaacagagtgcgtaataaaagact-atttgaaattttgatacattgatggactatt 1344673  T
Q  101 gtgattactcat 112  Q
    |||| |||||||    
T  1344674 gtgactactcat 1344685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 14669347 - 14669300
Alignment:
Q  27 gtcaaggactattttgactaacatagtgcacaattagagactcttttg 74  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  14669347 gtcaaggactattttgactaacatagtgcacaatcagagactattttg 14669300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 26905085 - 26904997
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||||||||| |||||||||| ||||  || || |||||| |||| |||| ||||| | ||||| ||||| ||||||||||||||    
T  26905085 tgtgagcattgagaaattattttagcgtcagtgattactttgacaaacaaagtgtacaataaaagactattttgaaattttgatacatt 26904997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 32996482 - 32996556
Alignment:
Q  15 gattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    ||||||||||| |||   ||||||||||| ||||| |||||||||| ||||||| |||| |||||||||| ||||    
T  32996482 gattattttagcgtcgtagactattttgattaacaaagtgcacaatcagagactattttagaattttgatgcatt 32996556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 14669489 - 14669565
Alignment:
Q  27 gtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtg 103  Q
    ||||||||||| ||||||||||| |||||||||| |   ||| |||| ||||||||||||||| | | |||||||||    
T  14669489 gtcaaggactactttgactaacagagtgcacaatcaagaactattttagaattttgatacattgagagactattgtg 14669565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 40355068 - 40355108
Alignment:
Q  33 gactattttgactaacatagtgcacaattagagactctttt 73  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  40355068 gactattttgactaacatagtgcacaatcagagactatttt 40355108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 41870698 - 41870734
Alignment:
Q  13 gagattattttagggtcaaggactattttgactaaca 49  Q
    ||||||||||||| |||||||||||||||||||||||    
T  41870698 gagattattttagcgtcaaggactattttgactaaca 41870734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 10228822 - 10228747
Alignment:
Q  19 attttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacat 94  Q
    |||||| |||||| ||||||||||||||||  | |||||||| | ||||| ||||| ||||| |||||||| ||||    
T  10228822 attttaaggtcaaagactattttgactaacgaattgcacaatcaaagactattttgaaatttcgatacatttacat 10228747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 7735351 - 7735404
Alignment:
Q  36 tattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||||||||||||||||||| |||  ||| |||| |||||| ||||||||    
T  7735351 tattttgactaacatagtgcacaactaggaacttttttagaatttggatacatt 7735404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 25689064 - 25688984
Alignment:
Q  32 ggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattactcat 112  Q
    |||||||||| ||||||| |||||| ||| ||| | | |||| ||||||| ||||||| | | ||||||||||||| ||||    
T  25689064 ggactattttaactaacaaagtgcaaaatcagaaattattttagaattttaatacattgagagactattgtgattattcat 25688984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 27376489 - 27376537
Alignment:
Q  37 attttgactaacatagtgcacaattagagactcttttggaattttgata 85  Q
    ||||||||||||||||| |||||| ||| ||| |||| |||||||||||    
T  27376489 attttgactaacatagtacacaatcagaaactattttagaattttgata 27376537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 39129201 - 39129289
Alignment:
Q  2 gtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatta 90  Q
    ||||| ||| || |||||||| || ||||  | ||||||||| ||||| |||||| ||||| ||| | |||| ||||||||||||||||    
T  39129201 gtgagtattaagggattatttaagcgtcacagtctattttgattaacaaagtgcataattatagattattttagaattttgatacatta 39129289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 21823 - 21931
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactatt 100  Q
    |||||| |||||||||||||||||| |||| | |||||||| ||||||| |||||||||| ||| | | |||| ||||||||||| ||| | | ||||||    
T  21823 tgtgagtattgagagattattttagtgtcatgaactatttttactaacaaagtgcacaatcagaaaatatttttgaattttgatatattgaaagactatt 21922  T
Q  101 gtgattact 109  Q
    |||| ||||    
T  21923 gtgactact 21931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 34884031 - 34883950
Alignment:
Q  8 attgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||||||||||||| |   ||  ||||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||    
T  34884031 attgagagattatttttgcaccagagactattttgactaacagagtgcacaattagagactattttaaaattttgatacatt 34883950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 6788452 - 6788540
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    |||||| |||||  |||||||||||  |||  ||||||| ||||||||| |||||||||| ||| ||| ||||  ||||||||||||||    
T  6788452 tgtgagtattgaaggattattttagcatcagagactattctgactaacaaagtgcacaatcagaaactattttaaaattttgatacatt 6788540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 40124373 - 40124295
Alignment:
Q  32 ggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattactc 110  Q
    |||||||||||||||||  |||||||||| ||||||  ||||  ||||| ||||||||||   |||||||||| |||||    
T  40124373 ggactattttgactaacggagtgcacaatcagagaccattttaaaatttcgatacattaatggactattgtgactactc 40124295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 18903171 - 18903244
Alignment:
Q  37 attttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattactc 110  Q
    ||||||| |||||||||||||||| ||| ||| |||| |||||| |||||||| |   |||||||||| |||||    
T  18903171 attttgattaacatagtgcacaatcagaaactattttagaatttcgatacattgaatgactattgtgactactc 18903244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 26369088 - 26369138
Alignment:
Q  2 gtgagcattgagagattattttagggtcaaggactattttgactaacatag 52  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  26369088 gtgagcattgagagattattttagcatcaagaactattttgactaacatag 26369138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 19264719 - 19264777
Alignment:
Q  32 ggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatta 90  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||  ||||| |||||||||    
T  19264719 ggactattttgactaacatagtgcataatcagagactattttaaaatttcgatacatta 19264777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 25085066 - 25085160
Alignment:
Q  16 attattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattactc 110  Q
    |||||||||  || || ||||||||||||||||| |||||||||| | | | | ||||  ||||||||||||||||  ||||||| |||||||||    
T  25085066 attattttaatgttaaagactattttgactaacaaagtgcacaatcaaaaagtattttaaaattttgatacattaaggtactattatgattactc 25085160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 515841 - 515764
Alignment:
Q  27 gtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtga 104  Q
    ||||| ||||||||  ||||||||||| ||||| ||| |||| ||||  |||||||||||||| | ||||||||||||    
T  515841 gtcaatgactatttcaactaacatagtacacaactagggactattttaaaattttgatacattgagatactattgtga 515764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 24084716 - 24084630
Alignment:
Q  3 tgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacatt 89  Q
    ||||||||||||||  |||||| ||||||  |||||||||||||||| |||| | | ||| | ||| ||||  ||||||||||||||    
T  24084716 tgagcattgagagacaattttaaggtcaaacactattttgactaacaaagtgtatatttaaatactattttaaaattttgatacatt 24084630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 515990 - 516067
Alignment:
Q  33 gactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactattgtgattactc 110  Q
    ||||||||||||||||  |||||||||| |  |||| ||||||||||| ||||||| ||  |||| |||||| |||||    
T  515990 gactattttgactaacgaagtgcacaatcattgactattttggaatttcgatacatcaagttactgttgtgactactc 516067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18354722 - 18354787
Alignment:
Q  1 tgtgagcattgagagattattttagggtcaaggactattttgactaacatagtgcacaattagaga 66  Q
    |||||| ||||| |||||||||||| ||||| ||||||||||| ||| | |||||| ||| |||||    
T  18354722 tgtgagtattgaaagattattttagcgtcaatgactattttgattaatagagtgcaaaatcagaga 18354787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 20564777 - 20564741
Alignment:
Q  5 agcattgagagattattttagggtcaaggactatttt 41  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  20564777 agcattgagagattattttagcgtcaagaactatttt 20564741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 31142155 - 31142247
Alignment:
Q  8 attgagagattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaacatactatt 100  Q
    ||||| ||||||||||||   ||  ||||||||||||||||| |||| | ||| | ||||| ||||| |||||||||| ||||| | ||||||    
T  31142155 attgaaagattattttagctccacagactattttgactaacagagtgtagaatcaaagactattttgaaattttgatatattaaaagactatt 31142247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 329016 - 329092
Alignment:
Q  15 gattattttagggtcaaggactattttgactaacatagtgcacaattagagactcttttggaattttgatacattaa 91  Q
    ||||||||||||||||  || ||||| |||||||| |||| | ||| ||| ||| ||||  ||||||||||||||||    
T  329016 gattattttagggtcagagagtatttagactaacaaagtgtataatcagaaactattttataattttgatacattaa 329092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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